Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

Association of Cell-Free DNA Tumor Fraction and Somatic Copy Number Alterations With Survival in Metastatic Triple-Negative Breast Cancer

(2018) Daniel G. Stover et al.   JOURNAL OF CLINICAL ONCOLOGY

A novel post hoc method for detecting index switching finds no evidence for increased switching on the Illumina HiSeq X

(2017) Gregory L. Owens et al.   Molecular Ecology Resources

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

(2013) Kristian Cibulskis et al.   NATURE BIOTECHNOLOGY

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

(2012) Goo Jun et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

(2011) Sheila Fisher et al.   GENOME BIOLOGY