Structural predictions of the functions of membrane proteins from HDX-MS

Interpretation of HDX Data by Maximum-Entropy Reweighting of Simulated Structural Ensembles

(2020) Richard T. Bradshaw et al.   BIOPHYSICAL JOURNAL

Reconciling Simulated Ensembles of Apomyoglobin with Experimental Hydrogen/Deuterium Exchange Data Using Bayesian Inference and Multiensemble Markov State Models

(2020) Hongbin Wan et al.   Journal of Chemical Theory and Computation

A glimpse into the molecular mechanism of integral membrane proteins through hydrogen–deuterium exchange mass spectrometry

(2020) Chloe Martens et al.   PROTEIN SCIENCE

Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry

(2019) Andy M C Lau et al.   BIOINFORMATICS

ATP-induced asymmetric pre-protein folding as a driver of protein translocation through the Sec machinery

(2019) Robin A Corey et al.   eLife

Structural insight into substrate and inhibitor discrimination by human P-glycoprotein

(2019) Amer Alam et al.   SCIENCE

Membrane Protein–Lipid Interactions Probed Using Mass Spectrometry

(2019) Jani Reddy Bolla et al.   Annual Review of Biochemistry

Conformational dynamics of the human serotonin transporter during substrate and drug binding

(2019) Ingvar R. Möller et al.   Nature Communications

HDX-Viewer: interactive 3D visualization of hydrogen–deuterium exchange data

(2019) David Bouyssié et al.   BIOINFORMATICS

Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments

(2019) Glenn R. Masson et al.   NATURE METHODS

Substrate-induced conformational dynamics of the dopamine transporter

(2019) Anne Kathrine Nielsen et al.   Nature Communications

HDX-MS reveals nucleotide-dependent, anti-correlated opening and closure of SecA and SecY channels of the bacterial translocon

(2019) Zainab Ahdash et al.   eLife

An Integrated Approach for Determining a Protein–Protein Binding Interface in Solution and an Evaluation of Hydrogen–Deuterium Exchange Kinetics for Adjudicating Candidate Docking Models

(2019) Mengru Mira Zhang et al.   ANALYTICAL CHEMISTRY

Integrating hydrogen–deuterium exchange mass spectrometry with molecular dynamics simulations to probe lipid-modulated conformational changes in membrane proteins

(2019) Chloe Martens et al.   Nature Protocols

Allosteric activation of an ion channel triggered by modification of mechanosensitive nano-pockets

(2019) Charalampos Kapsalis et al.   Nature Communications

Structural characterisation of medically relevant protein assemblies by integrating mass spectrometry with computational modelling

(2018) Argyris Politis et al.   Journal of Proteomics

Specific cardiolipin–SecY interactions are required for proton-motive force stimulation of protein secretion

(2018) Robin A. Corey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling Protein Complexes Using Restraints from Crosslinking Mass Spectrometry

(2018) Joshua Matthew Allen Bullock et al.   STRUCTURE

Interpreting Hydrogen-Deuterium Exchange Events in Proteins Using Atomistic Simulations: Case Studies on Regulators of G-protein Signaling Proteins

(2018) Hossein Mohammadiarani et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A Mass-Spectrometry-Based Modelling Workflow for Accurate Prediction of IgG Antibody Conformations in the Gas Phase

(2018) Kjetil Hansen et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Accurate Prediction of Amide Exchange in the Fast Limit Reveals Thrombin Allostery

(2018) Phineus R.L. Markwick et al.   BIOPHYSICAL JOURNAL

POPPeT: a New Method to Predict the Protection Factor of Backbone Amide Hydrogens

(2018) Jürgen Claesen et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Protein Dynamics Revealed by Hydrogen Deuterium Exchange Mass Spectrometry: Correlation between Experiments and Simulation

(2018) Liwen Huang et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Direct protein-lipid interactions shape the conformational landscape of secondary transporters

(2018) Chloe Martens et al.   Nature Communications

Calcium-Mediated Control of S100 Proteins: Allosteric Communication via an Agitator/Signal Blocking Mechanism

(2017) Yiming Xiao et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Structure of the full-length glucagon class B G-protein-coupled receptor

(2017) Haonan Zhang et al.   NATURE

Mechanistic insight into the assembly of the HerA–NurA helicase–nuclease DNA end resection complex

(2017) Zainab Ahdash et al.   NUCLEIC ACIDS RESEARCH

Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer

(2017) Suraj Adhikary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ligand-induced conformational dynamics of theEscherichia coliNa+/H+antiporter NhaA revealed by hydrogen/deuterium exchange mass spectrometry

(2017) Martin Lorenz Eisinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MEMHDX: An interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

(2016) Véronique Hourdel et al.   BIOINFORMATICS

Structural Dynamics in Ras and Related Proteins upon Nucleotide Switching

(2016) Rane A. Harrison et al.   JOURNAL OF MOLECULAR BIOLOGY

Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein

(2016) Jogender Singh et al.   JOURNAL OF MOLECULAR BIOLOGY

Lipids modulate the conformational dynamics of a secondary multidrug transporter

(2016) Chloé Martens et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Probing the Binding Interfaces of Protein Complexes Using Gas-Phase H/D Exchange Mass Spectrometry

(2016) Ulrik H. Mistarz et al.   STRUCTURE

Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly

(2016) Marjetka Podobnik et al.   Nature Communications

Lipids modulate the conformational dynamics of a secondary multidrug transporter

(2016) Chloé Martens et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Challenges in the Interpretation of Protein H/D Exchange Data: A Molecular Dynamics Simulation Perspective

(2015) Robert G. McAllister et al.   BIOCHEMISTRY

Topological Models of Heteromeric Protein Assemblies from Mass Spectrometry: Application to the Yeast eIF3:eIF5 Complex

(2015) Argyris Politis et al.   CHEMISTRY & BIOLOGY

Uncovering the Early Assembly Mechanism for Amyloidogenic β2-Microglobulin Using Cross-linking and Native Mass Spectrometry

(2015) Zoe Hall et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

How amide hydrogens exchange in native proteins

(2015) Filip Persson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ion mobility–mass spectrometry of a rotary ATPase reveals ATP-induced reduction in conformational flexibility

(2014) Min Zhou et al.   Nature Chemistry

A mass spectrometry–based hybrid method for structural modeling of protein complexes

(2014) Argyris Politis et al.   NATURE METHODS

Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry

(2014) Albert Konijnenberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing the Conformational Diversity of Cancer-Associated Mutations in p53 with Ion-Mobility Mass Spectrometry

(2013) Ewa Jurneczko et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Emerging computational approaches for the study of protein allostery

(2013) Galen Collier et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Structural evidence for functional lipid interactions in the betaine transporter BetP

(2013) Caroline Koshy et al.   EMBO JOURNAL

The Backbone Dynamics of the Amyloid Precursor Protein Transmembrane Helix Provides a Rationale for the Sequential Cleavage Mechanism of γ-Secretase

(2012) Oxana Pester et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mass spectrometry: come of age for structural and dynamical biology

(2011) Justin LP Benesch et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Differential hydrogen/deuterium exchange mass spectrometry analysis of protein–ligand interactions

(2011) Michael J Chalmers et al.   Expert Review of Proteomics

Mass Spectrometry of Intact V-Type ATPases Reveals Bound Lipids and the Effects of Nucleotide Binding

(2011) M. Zhou et al.   SCIENCE

Hydrogen exchange mass spectrometry for studying protein structure and dynamics

(2010) Lars Konermann et al.   CHEMICAL SOCIETY REVIEWS

Mass spectrometry of membrane transporters reveals subunit stoichiometry and interactions

(2009) Nelson P Barrera et al.   NATURE METHODS

A Specific Cholesterol Binding Site Is Established by the 2.8 Å Structure of the Human β2-Adrenergic Receptor

(2008) Michael A. Hanson et al.   STRUCTURE