Assessment of ethanol tolerance of Kluyveromyces marxianus CCT 7735 selected by adaptive laboratory evolution

Ethanol stress responses of Kluyveromyces marxianus CCT 7735 revealed by proteomic and metabolomic analyses

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Kluyveromyces marxianus developing ethanol tolerance during adaptive evolution with significant improvements of multiple pathways

(2019) Wenjuan Mo et al.   Biotechnology for Biofuels

Genomic analysis and lactose transporter expression in Kluyveromyces marxianus CCT 7735

(2019) Lílian Cardoso de Paiva et al.   Fungal Biology

Outline of the biosynthesis and regulation of ergosterol in yeast

(2019) Jun-Feng Liu et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi

(2018) Jens Keilwagen et al.   BMC BIOINFORMATICS

Sugar transport systems in Kluyveromyces marxianus CCT 7735

(2018) Fernando Augusto da Silveira et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Elucidation of ethanol tolerance mechanisms inSaccharomyces cerevisiaeby global metabolite profiling

(2016) Sooah Kim et al.   Biotechnology Journal

How do yeast cells become tolerant to high ethanol concentrations?

(2016) Tim Snoek et al.   CURRENT GENETICS

Metabolomic approach for improving ethanol stress tolerance in Saccharomyces cerevisiae

(2016) Erika Ohta et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Incorporation of whey permeate, a dairy effluent, in ethanol fermentation to provide a zero waste solution for the dairy industry

(2016) Archana Parashar et al.   JOURNAL OF DAIRY SCIENCE

Adaptation to different types of stress converge on mitochondrial metabolism

(2016) Petri-Jaan Lahtvee et al.   MOLECULAR BIOLOGY OF THE CELL

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

Elucidation of ethanol tolerance mechanisms inSaccharomyces cerevisiaeby global metabolite profiling

(2016) Sooah Kim et al.   Biotechnology Journal

Biofuels 2020: Biorefineries based on lignocellulosic materials

(2016) Miguel Valdivia et al.   Microbial Biotechnology

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Optimizing ethanol production by thermotolerant Kluyveromyces marxianus CCT 7735 in a mixture of sugarcane bagasse and ricotta whey

(2015) Priscila Gonçalves Ferreira et al.   FOOD SCIENCE AND BIOTECHNOLOGY

Changes of Saccharomyces cerevisiae cell membrane components and promotion to ethanol tolerance during the bioethanol fermentation

(2015) Shi-Jun Dong et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Thermotolerant Yeast Strains Adapted by Laboratory Evolution Show Trade-Off at Ancestral Temperatures and Preadaptation to Other Stresses

(2015) Luis Caspeta et al.   mBio

Examining the Role of Membrane Lipid Composition in Determining the Ethanol Tolerance of Saccharomyces cerevisiae

(2014) Clark M. Henderson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Physiological characterization of thermotolerant yeast for cellulosic ethanol production

(2014) Daniela A. Costa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Altered sterol composition renders yeast thermotolerant

(2014) L. Caspeta et al.   SCIENCE

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Adaptive laboratory evolution – principles and applications for biotechnology

(2013) Martin Dragosits et al.   Microbial Cell Factories

Quantitative 1H-NMR-Metabolomics Reveals Extensive Metabolic Reprogramming and the Effect of the Aquaglyceroporin FPS1 in Ethanol-Stressed Yeast Cells

(2013) Artur B. Lourenço et al.   PLoS One

REAPR: a universal tool for genome assembly evaluation

(2013) Martin Hunt et al.   GENOME BIOLOGY

Role of Unsaturated Lipid and Ergosterol in Ethanol Tolerance of Model Yeast Biomembranes

(2012) Juan M. Vanegas et al.   BIOPHYSICAL JOURNAL

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Cheese whey management: A review

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(2011) Stefan Götz et al.   BIOINFORMATICS

The variant call format and VCFtools

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REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Mechanisms of ethanol tolerance in Saccharomyces cerevisiae

(2010) Menggen Ma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial production of xylitol from d-xylose and sugarcane bagasse hemicellulose using newly isolated thermotolerant yeast Debaryomyces hansenii

(2010) Gyan Prakash et al.   BIORESOURCE TECHNOLOGY

Technological trends, global market, and challenges of bio-ethanol production

(2010) Solange I. Mussatto et al.   BIOTECHNOLOGY ADVANCES

The ethanol stress response and ethanol tolerance ofSaccharomyces cerevisiae

(2010) D. Stanley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Analytical platform for metabolome analysis of microbial cells using methyl chloroformate derivatization followed by gas chromatography–mass spectrometry

(2010) Kathleen F Smart et al.   Nature Protocols

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Mechanisms of yeast stress tolerance and its manipulation for efficient fuel ethanol production

(2009) X.Q. Zhao et al.   JOURNAL OF BIOTECHNOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Biofuels and the biorefinery concept

(2008) Gail Taylor   ENERGY POLICY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY