Riboregulation in Nitrogen-Fixing Endosymbiotic Bacteria

Transcription attenuation-derived small RNA rnTrpL regulates tryptophan biosynthesis gene expression in trans

(2019) Hendrik Melior et al.   NUCLEIC ACIDS RESEARCH

Rhizobial tRNA-derived small RNAs are signal molecules regulating plant nodulation

(2019) Bo Ren et al.   SCIENCE

Sinorhizobium meliloti YbeY is a zinc-dependent single-strand specific endoribonuclease that plays an important role in 16S ribosomal RNA processing

(2019) Vignesh M P Babu et al.   NUCLEIC ACIDS RESEARCH

Use of RNA Immunoprecipitation Method for Determining Sinorhizobium meliloti RNA-Hfq Protein Associations In Vivo

(2018) Mengsheng Gao et al.   BIOLOGICAL PROCEDURES ONLINE

Expression of the small regulatory RNA gene mmgR is regulated negatively by AniA and positively by NtrC in Sinorhizobium meliloti 2011

(2018) Germán Ceizel Borella et al.   MICROBIOLOGY-SGM

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

RNA-binding proteins in bacteria

(2018) Erik Holmqvist et al.   NATURE REVIEWS MICROBIOLOGY

The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus

(2018) Carlos J Caballero et al.   NUCLEIC ACIDS RESEARCH

Legume nodulation: The host controls the party

(2018) Brett J. Ferguson et al.   PLANT CELL AND ENVIRONMENT

An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA

(2018) Marta Robledo et al.   Frontiers in Microbiology

Sinorhizobium meliloti RNase III: Catalytic Features and Impact on Symbiosis

(2018) Margarida Saramago et al.   Frontiers in Genetics

A conserved α-proteobacterial small RNA contributes to osmoadaptation and symbiotic efficiency of rhizobia on legume roots

(2017) Marta Robledo et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of Polyhydroxybutyrate Accumulation in Sinorhizobium meliloti by the Trans -Encoded Small RNA MmgR

(2017) Antonio Lagares et al.   JOURNAL OF BACTERIOLOGY

RNase E and RNase J are needed for S-adenosylmethionine homeostasis in Sinorhizobium meliloti

(2017) Kathrin Baumgardt et al.   MICROBIOLOGY-SGM

An account of evolutionary specialization: the AbcR small RNAs in the Rhizobiales

(2017) Lauren M. Sheehan et al.   MOLECULAR MICROBIOLOGY

ProQ/FinO-domain proteins: another ubiquitous family of RNA matchmakers?

(2017) Mikolaj Olejniczak et al.   MOLECULAR MICROBIOLOGY

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

RNA silencing in plant symbiotic bacteria: Insights from a protein-centric view

(2017) José I. Jiménez-Zurdo et al.   RNA Biology

A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R

(2017) Xie Fuli et al.   Frontiers in Microbiology

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation

(2016) Jelena Čuklina et al.   BMC GENOMICS

A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

(2016) Laurence Ettwiller et al.   BMC GENOMICS

Spatiotemporal choreography of chromosome and megaplasmids in theSinorhizobium meliloticell cycle

(2016) Benjamin Frage et al.   MOLECULAR MICROBIOLOGY

Phylogenetic distribution and evolutionary pattern of an α-proteobacterial small RNA gene that controls polyhydroxybutyrate accumulation in Sinorhizobium meliloti

(2016) Antonio Lagares et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Regulation of fixLJ by Hfq Controls Symbiotically Important Genes in Sinorhizobium meliloti

(2016) Mengsheng Gao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Quorum sensing signal–response systems in Gram-negative bacteria

(2016) Kai Papenfort et al.   NATURE REVIEWS MICROBIOLOGY

Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation

(2016) Margarida Saramago et al.   NUCLEIC ACIDS RESEARCH

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

(2016) Alexandre Smirnov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing Dynamics

(2015) Lihui Feng et al.   CELL

Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA

(2015) M. Miyakoshi et al.   EMBO JOURNAL

Regulation of Bacterial Virulence by Csr (Rsm) Systems

(2015) Christopher A. Vakulskas et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A LysR-family transcriptional regulator required for virulence inBrucella abortusis highly conserved among the α-proteobacteria

(2015) Lauren M. Sheehan et al.   MOLECULAR MICROBIOLOGY

Transcriptomic Analysis ofSinorhizobium melilotiandMedicago truncatulaSymbiosis Using Nitrogen Fixation–Deficient Nodules

(2015) Claus Lang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Thermodynamic matchers for the construction of the cuckoo RNA family

(2015) Jan Reinkensmeier et al.   RNA Biology

The stress-related, rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNAsinIinSinorhizobium meliloti

(2015) Kathrin Baumgardt et al.   RNA Biology

Unraveling the universe of small RNA regulators in the legume symbiont Sinorhizobium meliloti

(2015) José I. Jiménez-Zurdo et al.   SYMBIOSIS

Antisense transcription of symbiotic genes in Sinorhizobium meliloti

(2015) Marta Robledo et al.   SYMBIOSIS

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti

(2015) Francesco Pini et al.   PLoS Genetics

A Stress-Induced Small RNA Modulates Alpha-Rhizobial Cell Cycle Progression

(2015) Marta Robledo et al.   PLoS Genetics

Transcriptional Regulator LsrB of Sinorhizobium meliloti Positively Regulates the Expression of Genes Involved in Lipopolysaccharide Biosynthesis

(2014) Guirong Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

To divide or not to divide: control of the bacterial cell cycle by environmental cues

(2014) Kristina Jonas   CURRENT OPINION IN MICROBIOLOGY

Differential RNA-seq: the approach behind and the biological insight gained

(2014) Cynthia M Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

RNase E Affects the Expression of the Acyl-Homoserine Lactone Synthase Gene sinI in Sinorhizobium meliloti

(2014) K. Baumgardt et al.   JOURNAL OF BACTERIOLOGY

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

(2014) Patrick R. Wright et al.   NUCLEIC ACIDS RESEARCH

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

(2014) Brice Roux et al.   PLANT JOURNAL

Host plant peptides elicit a transcriptional response to control theSinorhizobium meliloticell cycle during symbiosis

(2014) Jon Penterman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region

(2014) Aaron Overlöper et al.   RNA Biology

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons inSinorhizobium meliloti

(2014) Omar Torres-Quesada et al.   RNA Biology

Riboregulation in plant-associated α-proteobacteria

(2014) Anke Becker et al.   RNA Biology

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

Regulatory RNAs and target mRNA decay in prokaryotes

(2013) David Lalaouna et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021

(2013) Jan-Philip Schlüter et al.   BMC GENOMICS

Sinorhizobium meliloti lsrB is involved in alfalfa root nodule development and nitrogen-fixing bacteroid differentiation

(2013) GuiRong Tang et al.   CHINESE SCIENCE BULLETIN

Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011

(2013) E. Sallet et al.   DNA RESEARCH

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Independent Activity of the Homologous Small Regulatory RNAs AbcR1 and AbcR2 in the Legume Symbiont Sinorhizobium meliloti

(2013) Omar Torres-Quesada et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cycling of RNAs on Hfq

(2013) E. Gerhart H. Wagner   RNA Biology

The bacterial protein Hfq: much more than a mere RNA-binding factor

(2012) Patricio Sobrero et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

(2012) I. Wilms et al.   JOURNAL OF BACTERIOLOGY

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation

(2012) Asha Ivy Jacob et al.   MOLECULAR CELL

Insights into the Noncoding RNome of Nitrogen-Fixing Endosymbiotic α-Proteobacteria

(2012) José I. Jiménez-Zurdo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011

(2012) Patricio Sobrero et al.   PLoS One

A survey of sRNA families in α-proteobacteria

(2012) Coral del Val et al.   RNA Biology

Small RNAs of theBradyrhizobium/Rhodopseudomonaslineage and their analysis

(2012) Ramakanth Madhugiri et al.   RNA Biology

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

Evidences of autoregulation of hfq expression in Sinorhizobium meliloti strain 2011

(2011) Patricio Sobrero et al.   ARCHIVES OF MICROBIOLOGY

The RNA Chaperone Hfq Independently Coordinates Expression of the VirB Type IV Secretion System and the LuxR-Type Regulator BabR in Brucella abortus 2308

(2011) C. C. Caswell et al.   JOURNAL OF BACTERIOLOGY

Mutation of GOGAT prevents pea bacteroid formation and N2 fixation by globally downregulating transport of organic nitrogen sources

(2011) G. Mulley et al.   MOLECULAR MICROBIOLOGY

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq

(2011) Shree P. Pandey et al.   NUCLEIC ACIDS RESEARCH

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Importance and key events of prokaryotic RNA decay: the ultimate fate of an RNA molecule

(2011) Inês Jesus Silva et al.   Wiley Interdisciplinary Reviews-RNA

Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales

(2011) Jan Reinkensmeier et al.   Genes

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

(2010) Jan-Philip Schlüter et al.   BMC GENOMICS

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

(2010) Maarten Vercruysse et al.   BMC GENOMICS

The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

(2010) Omar Torres-Quesada et al.   BMC MICROBIOLOGY

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

(2010) Matteo Brilli et al.   BMC Systems Biology

The Sinorhizobium meliloti RNA Chaperone Hfq Mediates Symbiosis of S. meliloti and Alfalfa

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Proteomic Alterations Explain Phenotypic Changes in Sinorhizobium meliloti Lacking the RNA Chaperone Hfq

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

RhizoRegNet—A database of rhizobial transcription factors and regulatory networks

(2010) Elizaveta Krol et al.   JOURNAL OF BIOTECHNOLOGY

Role of theSinorhizobium melilotiGlobal Regulator Hfq in Gene Regulation and Symbiosis

(2010) Mengsheng Gao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Legionella pneumophila 6S RNA optimizes intracellular multiplication

(2010) S. P. Faucher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

(2010) Alexandra Sittka et al.   RNA Biology

Plant Peptides Govern Terminal Differentiation of Bacteria in Symbiosis

(2010) W. Van de Velde et al.   SCIENCE

Post-transcriptional regulation of NifA expression by Hfq and RNase E complex in Rhizobium leguminosarum bv. viciae

(2009) Y. Zhang et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti

(2009) Björn Voss et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Mutualism versus pathogenesis: the give-and-take in plant-bacteria interactions

(2009) María J. Soto et al.   CELLULAR MICROBIOLOGY

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA inSinorhizobium meliloti

(2009) Ramakanth Madhugiri et al.   FEBS LETTERS

Genetic characterization of oligopeptide uptake systems inSinorhizobium meliloti

(2009) Joaquina Nogales et al.   FEMS MICROBIOLOGY LETTERS

NovelSinorhizobium melilotiquorum sensing positive and negative regulatory feedback mechanisms respond to phosphate availability

(2009) Matthew McIntosh et al.   MOLECULAR MICROBIOLOGY

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

(2009) Rotem Sorek et al.   NATURE REVIEWS GENETICS

Legumes regulate Rhizobium bacteroid development and persistence by the supply of branched-chain amino acids

(2009) J. Prell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?

(2009) Catherine Masson-Boivin et al.   TRENDS IN MICROBIOLOGY

Molecular Determinants of a Symbiotic Chronic Infection

(2008) Katherine E. Gibson et al.   Annual Review of Genetics

Biology oftrans-Translation

(2008) Kenneth C. Keiler   Annual Review of Microbiology

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

(2008) Claudio Valverde et al.   BMC GENOMICS

A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data

(2008) Anke Becker et al.   JOURNAL OF BIOTECHNOLOGY

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics