Rhizobial tRNA-derived small RNAs are signal molecules regulating plant nodulation

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Legume nodulation: The host controls the party

(2018) Brett J. Ferguson et al.   PLANT CELL AND ENVIRONMENT

Tie-Break: Host and Retrotransposons Play tRNA

(2018) Andrea J. Schorn et al.   TRENDS IN CELL BIOLOGY

Efficient targeted mutagenesis in soybean by TALENs and CRISPR/Cas9

(2016) Hongyang Du et al.   JOURNAL OF BIOTECHNOLOGY

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees

(2016) Zilong He et al.   NUCLEIC ACIDS RESEARCH

Characterization of a Functional Role of the Bradyrhizobium japonicum Isocitrate Lyase in Desiccation Tolerance

(2015) Jeong-Min Jeon et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family

(2015) Sudhansu Dash et al.   NUCLEIC ACIDS RESEARCH

Identification of RNA silencing components in soybean and sorghum

(2014) Xiang Liu et al.   BMC BIOINFORMATICS

Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets

(2014) Pankaj Kumar et al.   BMC BIOLOGY

Molecular response to the pathogen Phytophthora sojae among ten soybean near isogenic lines revealed by comparative transcriptomics

(2014) Feng Lin et al.   BMC GENOMICS

CRISPR-P: A Web Tool for Synthetic Single-Guide RNA Design of CRISPR-System in Plants

(2014) Yang Lei et al.   Molecular Plant

An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes

(2014) Siwaret Arikit et al.   PLANT CELL

Dt2Is a Gain-of-Function MADS-Domain Factor Gene That Specifies Semideterminacy in Soybean

(2014) Jieqing Ping et al.   PLANT CELL

Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data

(2013) Mingzhu Zhu et al.   BMC BIOINFORMATICS

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes

(2013) Takatomo Fujisawa et al.   NUCLEIC ACIDS RESEARCH

Effective Small RNA Destruction by the Expression of a Short Tandem Target Mimic in Arabidopsis

(2012) J. Yan et al.   PLANT CELL

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Arabidopsis RHD3 mediates the generation of the tubular ER network and is required for Golgi distribution and motility in plant cells

(2011) J. Chen et al.   JOURNAL OF CELL SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Arabidopsis Homologs of the Petunia HAIRY MERISTEM Gene Are Required for Maintenance of Shoot and Root Indeterminacy

(2010) E. M. Engstrom et al.   PLANT PHYSIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection

(2009) M. Libault et al.   PLANT PHYSIOLOGY