Riboregulation in plant-associated α-proteobacteria

Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria

(2014) Shree P Pandey et al.   BMC GENOMICS

RNase E Affects the Expression of the Acyl-Homoserine Lactone Synthase Gene sinI in Sinorhizobium meliloti

(2014) K. Baumgardt et al.   JOURNAL OF BACTERIOLOGY

Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region

(2014) Aaron Overlöper et al.   RNA Biology

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons inSinorhizobium meliloti

(2014) Omar Torres-Quesada et al.   RNA Biology

Bellman’s GAP—a language and compiler for dynamic programming in sequence analysis

(2013) Georg Sauthoff et al.   BIOINFORMATICS

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021

(2013) Jan-Philip Schlüter et al.   BMC GENOMICS

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

The Escherichia coli Translation-Associated Heat Shock Protein YbeY Is Involved in rRNA Transcription Antitermination

(2013) Maya Grinwald et al.   PLoS One

A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens

(2013) Keunsub Lee et al.   PLoS One

Independent Activity of the Homologous Small Regulatory RNAs AbcR1 and AbcR2 in the Legume Symbiont Sinorhizobium meliloti

(2013) Omar Torres-Quesada et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The bacterial protein Hfq: much more than a mere RNA-binding factor

(2012) Patricio Sobrero et al.   CRITICAL REVIEWS IN MICROBIOLOGY

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

(2012) I. Wilms et al.   JOURNAL OF BACTERIOLOGY

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

(2012) Katarzyna J. Bandyra et al.   MOLECULAR CELL

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation

(2012) Asha Ivy Jacob et al.   MOLECULAR CELL

Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308

(2012) Clayton C. Caswell et al.   MOLECULAR MICROBIOLOGY

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011

(2012) Patricio Sobrero et al.   PLoS One

A survey of sRNA families in α-proteobacteria

(2012) Coral del Val et al.   RNA Biology

Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

(2012) Ina Wilms et al.   RNA Biology

Small RNAs of theBradyrhizobium/Rhodopseudomonaslineage and their analysis

(2012) Ramakanth Madhugiri et al.   RNA Biology

Evidences of autoregulation of hfq expression in Sinorhizobium meliloti strain 2011

(2011) Patricio Sobrero et al.   ARCHIVES OF MICROBIOLOGY

New aspects of RNA processing in prokaryotes

(2011) Elena Evguenieva-Hackenberg et al.   CURRENT OPINION IN MICROBIOLOGY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides

(2011) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Mutation of GOGAT prevents pea bacteroid formation and N2 fixation by globally downregulating transport of organic nitrogen sources

(2011) G. Mulley et al.   MOLECULAR MICROBIOLOGY

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq

(2011) Shree P. Pandey et al.   NUCLEIC ACIDS RESEARCH

Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales

(2011) Jan Reinkensmeier et al.   Genes

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

(2010) Jan-Philip Schlüter et al.   BMC GENOMICS

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

(2010) Maarten Vercruysse et al.   BMC GENOMICS

The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

(2010) Omar Torres-Quesada et al.   BMC MICROBIOLOGY

The Sinorhizobium meliloti RNA Chaperone Hfq Mediates Symbiosis of S. meliloti and Alfalfa

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Proteomic Alterations Explain Phenotypic Changes in Sinorhizobium meliloti Lacking the RNA Chaperone Hfq

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity

(2010) Ramakanth Madhugiri et al.   MOLECULAR GENETICS AND GENOMICS

Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing

(2010) Bryan W. Davies et al.   MOLECULAR MICROBIOLOGY

Role of theSinorhizobium melilotiGlobal Regulator Hfq in Gene Regulation and Symbiosis

(2010) Mengsheng Gao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

(2010) C. Lorenz et al.   NUCLEIC ACIDS RESEARCH

Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway

(2010) Sandra C. Viegas et al.   NUCLEIC ACIDS RESEARCH

The influence of Hfq and ribonucleases on the stability of the small non-coding RNA OxyS and its targetrpoSinE. coliis growth phase dependent

(2010) Sobha Rani Basineni et al.   RNA Biology

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

(2010) Alexandra Sittka et al.   RNA Biology

Post-transcriptional regulation of NifA expression by Hfq and RNase E complex in Rhizobium leguminosarum bv. viciae

(2009) Y. Zhang et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti

(2009) Björn Voss et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA inSinorhizobium meliloti

(2009) Ramakanth Madhugiri et al.   FEBS LETTERS

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

(2009) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

NovelSinorhizobium melilotiquorum sensing positive and negative regulatory feedback mechanisms respond to phosphate availability

(2009) Matthew McIntosh et al.   MOLECULAR MICROBIOLOGY

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

(2008) Claudio Valverde et al.   BMC GENOMICS

A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM

(2008) Ann Kathrin Heroven et al.   MOLECULAR MICROBIOLOGY

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics