Predicting Bacteriophage Enzymes and Hydrolases by Using Combined Features

Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening

(2020) Shaherin Basith et al.   MEDICINAL RESEARCH REVIEWS

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

Morphological Segmentation Analysis and Texture-based Support Vector Machines Classification on Mice Liver Fibrosis Microscopic Images

(2019) Yu Wang et al.   Current Bioinformatics

mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides

(2019) Vinothini Boopathi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

EmExplorer: a database for exploring time activation of gene expression in mammalian embryos

(2019) Bosu Hu et al.   Open Biology

Meta-4mCpred: A Sequence-Based Meta-Predictor for Accurate DNA 4mC Site Prediction Using Effective Feature Representation

(2019) Balachandran Manavalan et al.   Molecular Therapy-Nucleic Acids

AOPs-SVM: A Sequence-Based Classifier of Antioxidant Proteins Using a Support Vector Machine

(2019) Chaolu Meng et al.   Frontiers in Bioengineering and Biotechnology

4mCpred-EL: An Ensemble Learning Framework for Identification of DNA N4-methylcytosine Sites in the Mouse Genome

(2019) Manavalan et al.   Cells

SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome

(2019) Shaherin Basith et al.   Molecular Therapy-Nucleic Acids

iRNA-m7G: Identifying N7-methylguanosine Sites by Fusing Multiple Features

(2019) Wei Chen et al.   Molecular Therapy-Nucleic Acids

Genomic characterization of key bacteriophages to formulate the potential biocontrol agent to combat enteric pathogenic bacteria

(2018) Krupa M. Parmar et al.   ARCHIVES OF MICROBIOLOGY

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

(2018) Zhen Chen et al.   BIOINFORMATICS

Function determinants of TET proteins: the arrangements of sequence motifs with specific codes

(2018) Dongyang Liu et al.   BRIEFINGS IN BIOINFORMATICS

Prediction of bacteriophage proteins located in the host cell using hybrid features

(2018) Jing-Hui Cheng et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Drug and Nondrug Classification Based on Deep Learning with Various Feature Selection Strategies

(2018) Long Yu et al.   Current Bioinformatics

Discriminating Ramos and Jurkat Cells with Image Textures from Diffraction Imaging Flow Cytometry Based on a Support Vector Machine

(2018) Ning Zhang et al.   Current Bioinformatics

The Advances and Challenges of Deep Learning Application in Biological Big Data Processing

(2018) Li Peng et al.   Current Bioinformatics

Computational prediction of sigma-54 promoters in bacterial genomes by integrating motif finding and machine learning strategies

(2018) Bingqiang Liu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

HBPred: a tool to identify growth hormone-binding proteins

(2018) Hua Tang et al.   International Journal of Biological Sciences

Prediction of human protein subcellular localization using deep learning

(2018) Leyi Wei et al.   JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

Machine-Learning-Based Prediction of Cell-Penetrating Peptides and Their Uptake Efficiency with Improved Accuracy

(2018) Balachandran Manavalan et al.   JOURNAL OF PROTEOME RESEARCH

Integration of deep feature representations and handcrafted features to improve the prediction of N 6 -methyladenosine sites

(2018) Leyi Wei et al.   NEUROCOMPUTING

PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine

(2018) Balachandran Manavalan et al.   Frontiers in Microbiology

iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional terminators

(2018) Chao-Qin Feng et al.   BIOINFORMATICS

Combining support vector machine with dual g-gap dipeptides to discriminate between acidic and alkaline enzymes

(2018) Xianfang Wang et al.   LETTERS IN ORGANIC CHEMISTRY

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation

(2018) Balachandran Manavalan et al.   BIOINFORMATICS

Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique

(2018) Fu-Ying Dao et al.   BIOINFORMATICS

A brief survey of machine learning methods in protein sub-Golgi localization

(2018) Wuritu Yang et al.   Current Bioinformatics

A Review on the Recent Developments of Sequence-based Protein Feature Extraction Methods

(2018) Jun Zhang et al.   Current Bioinformatics

A Review of DNA-binding Protein Prediction Methods

(2018) Kaiyang Qu et al.   Current Bioinformatics

Recent advances in machine learning methods for predicting heat shock proteins

(2018) Wei Chen et al.   CURRENT DRUG METABOLISM

Predicting protein structural classes for low-similarity sequences by evaluating different features

(2018) Xiao-Juan Zhu et al.   KNOWLEDGE-BASED SYSTEMS

Identification of drug-side effect association via multiple information integration with centered kernel alignment

(2018) Yijie Ding et al.   NEUROCOMPUTING

LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse

(2018) Liang Cheng et al.   NUCLEIC ACIDS RESEARCH

Identification of drug-target interactions via multiple information integration

(2017) Yijie Ding et al.   INFORMATION SCIENCES

Identification of Secretory Proteins of Malaria Parasite by Feature Selection Technique

(2017) Hua Tang et al.   LETTERS IN ORGANIC CHEMISTRY

MeDReaders: a database for transcription factors that bind to methylated DNA

(2017) Guohua Wang et al.   NUCLEIC ACIDS RESEARCH

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest

(2017) Balachandran Manavalan et al.   Oncotarget

Methods of MicroRNA Promoter Prediction and Transcription Factor Mediated Regulatory Network

(2017) Yuming Zhao et al.   Biomed Research International

Prediction of cell-penetrating peptides with feature selection techniques

(2016) Hua Tang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Pro54DB: a database for experimentally verified sigma-54 promoters

(2016) Zhi-Yong Liang et al.   BIOINFORMATICS

PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition

(2016) Yongchun Zuo et al.   BIOINFORMATICS

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy

(2016) Quan Zou et al.   BMC Systems Biology

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

Identification of Bacterial Cell Wall Lyases via Pseudo Amino Acid Composition

(2016) Xin-Xin Chen et al.   Biomed Research International

Identification of Secretory Proteins inMycobacterium tuberculosisUsing Pseudo Amino Acid Composition

(2016) Huan Yang et al.   Biomed Research International

PHYPred: a tool for identifying bacteriophage enzymes and hydrolases

(2016) Hui Ding et al.   VIROLOGICA SINICA

MicroRNA Promoter Identification inArabidopsisUsing Multiple Histone Markers

(2015) Yuming Zhao et al.   Biomed Research International

Identification of mitochondrial proteins of malaria parasite using analysis of variance

(2014) Hui Ding et al.   AMINO ACIDS

Predicting peroxidase subcellular location by hybridizing different descriptors of Chou’ pseudo amino acid patterns

(2014) Yong-Chun Zuo et al.   ANALYTICAL BIOCHEMISTRY

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

DMINDA: an integrated web server for DNA motif identification and analyses

(2014) Qin Ma et al.   NUCLEIC ACIDS RESEARCH

The Peptidoglycan Hydrolase of Staphylococcus aureus Bacteriophage ϕ11 Plays a Structural Role in the Viral Particle

(2013) Lorena Rodríguez-Rubio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prediction of Golgi-resident protein types by using feature selection technique

(2013) Hui Ding et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Naïve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins

(2013) Peng-Mian Feng et al.   Computational and Mathematical Methods in Medicine

Predicting human microRNA-disease associations based on support vector machine

(2013) Qinghua Jiang et al.   International Journal of Data Mining and Bioinformatics

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Predict mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou’s pseudo amino acid composition

(2012) Guo-Liang Fan et al.   JOURNAL OF THEORETICAL BIOLOGY

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Phage Therapy: Concept to Cure

(2012) Eric C. Keen   Frontiers in Microbiology

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

(2010) Jiangning Song et al.   BIOINFORMATICS

Prediction of nucleosome DNA formation potential and nucleosome positioning using increment of diversity combined with quadratic discriminant analysis

(2010) Xiujuan Zhao et al.   CHROMOSOME RESEARCH

Signal Transducers and Activators of Transcription-1 (STAT1) Regulates microRNA Transcription in Interferon γ-Stimulated HeLa Cells

(2010) Guohua Wang et al.   PLoS One

Eukaryotic and prokaryotic promoter prediction using hybrid approach

(2010) Hao Lin et al.   THEORY IN BIOSCIENCES

Using reduced amino acid composition to predict defensin family and subfamily: Integrating similarity measure and structural alphabet

(2009) Yong-Chun Zuo et al.   PEPTIDES

Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells

(2008) Guohua Wang et al.   BMC GENOMICS