EmExplorer: a database for exploring time activation of gene expression in mammalian embryos

Functional genetics of early human development

(2018) Nicolás M Ortega et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

(2017) Xinyi Wang et al.   GENOME RESEARCH

CSTEA: a webserver for the Cell State Transition Expression Atlas

(2017) Guanghui Zhu et al.   NUCLEIC ACIDS RESEARCH

Modeling gene regulation from paired expression and chromatin accessibility data

(2017) Zhana Duren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coexpression analysis identifies nuclear reprogramming barriers of somatic cell nuclear transfer embryos

(2017) Yongchun Zuo et al.   Oncotarget

PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition

(2016) Yongchun Zuo et al.   BIOINFORMATICS

GED: a manually curated comprehensive resource for epigenetic modification of gametogenesis

(2016) Weiyang Bai et al.   BRIEFINGS IN BIOINFORMATICS

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos

(2016) Mubeen Goolam et al.   CELL

Molecular features of cellular reprogramming and development

(2016) Zachary D. Smith et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Exploring timing activation of functional pathway based on differential co-expression analysis in preimplantation embryogenesis

(2016) Yongchun Zuo et al.   Oncotarget

Irregular transcriptome reprogramming probably causes thec developmental failure of embryos produced by interspecies somatic cell nuclear transfer between the Przewalski’s gazelle and the bovine

(2015) Yongchun Zuo et al.   BMC GENOMICS

Genome activation in bovine embryos: Review of the literature and new insights from RNA sequencing experiments

(2014) Alexander Graf et al.   ANIMAL REPRODUCTION SCIENCE

Zygotic Genome Activation During the Maternal-to-Zygotic Transition

(2014) Miler T. Lee et al.   Annual Review of Cell and Developmental Biology

Transcriptional profiles of bovine in vivo pre-implantation development

(2014) Zongliang Jiang et al.   BMC GENOMICS

MetaImprint: an information repository of mammalian imprinted genes

(2014) Y. Wei et al.   DEVELOPMENT

DBTMEE: a database of transcriptome in mouse early embryos

(2014) Sung-Joon Park et al.   NUCLEIC ACIDS RESEARCH

Fine mapping of genome activation in bovine embryos by RNA sequencing

(2014) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Timing of developmental events in the early mouse embryo

(2014) Yoji Kojima et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Nanog-Independent Reprogramming to iPSCs with Canonical Factors

(2014) Ava C. Carter et al.   Stem Cell Reports

Maternal factors required for oocyte developmental competence in mice: Transcriptome analysis of non-surrounded nucleolus (NSN) and surrounded nucleolus (SN) oocytes

(2013) Jun-Yu Ma et al.   CELL CYCLE

Oct4 Cell-Autonomously Promotes Primitive Endoderm Development in the Mouse Blastocyst

(2013) Tristan Frum et al.   DEVELOPMENTAL CELL

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

(2013) Zhigang Xue et al.   NATURE

EMAGE mouse embryo spatial gene expression database: 2014 update

(2013) Lorna Richardson et al.   NUCLEIC ACIDS RESEARCH

Distinct Lineage Specification Roles for NANOG, OCT4, and SOX2 in Human Embryonic Stem Cells

(2012) Zheng Wang et al.   Cell Stem Cell

Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development

(2011) R. Vassena et al.   DEVELOPMENT

Housekeeping Gene Transcript Abundance in Bovine Fertilized and Cloned Embryos

(2010) Pablo J. Ross et al.   Cellular Reprogramming

Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst

(2010) Guoji Guo et al.   DEVELOPMENTAL CELL

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species

(2010) D. Xie et al.   GENOME RESEARCH

Dynamic changes in gene expression during human early embryo development: from fundamental aspects to clinical applications

(2010) S. Assou et al.   HUMAN REPRODUCTION UPDATE

More than a decade of developmental gene expression atlases: where are we now?

(2009) B. A. de Boer et al.   NUCLEIC ACIDS RESEARCH

Dissecting Signaling Pathways That Govern Self-renewal of Rabbit Embryonic Stem Cells

(2008) Shufen Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY