Cascleave: towards more accurate prediction of caspase substrate cleavage sites

Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

(2009) JB Brown et al.   BMC BIOINFORMATICS

Prediction of nuclear proteins using SVM and HMM models

(2009) Manish Kumar et al.   BMC BIOINFORMATICS

Prediction of guide strand of microRNAs from its sequence and secondary structure

(2009) Firoz Ahmed et al.   BMC BIOINFORMATICS

A multi-factor model for caspase degradome prediction

(2009) Lawrence JK Wee et al.   BMC GENOMICS

Human Caspases: Activation, Specificity, and Regulation

(2009) Cristina Pop et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural and kinetic determinants of protease substrates

(2009) John C Timmer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction

(2009) Jianlin Shao et al.   PLoS One

Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

(2009) Jiangning Song et al.   PLoS One

HSEpred: predict half-sphere exposure from protein sequences

(2008) Jiangning Song et al.   BIOINFORMATICS

Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini

(2008) Sami Mahrus et al.   CELL

Global Mapping of the Topography and Magnitude of Proteolytic Events in Apoptosis

(2008) Melissa M. Dix et al.   CELL

Caspase-14 reveals its secrets

(2008) Geertrui Denecker et al.   JOURNAL OF CELL BIOLOGY

Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

(2008) Oliver Schilling et al.   NATURE BIOTECHNOLOGY

Proteolytic needles in the cellular haystack

(2008) Mari Enoksson et al.   Nature Chemical Biology

CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences

(2008) Mridul K. Kalita et al.   PLoS One