Genome-Wide Characterization of Alternative Splicing Events and Their Responses to Cold Stress in Tilapia

Digital gene expression analysis in the gills of Ruditapes philippinarum exposed to short- and long-term exposures of ammonia nitrogen

(2018) Ming Cong et al.   AQUATIC TOXICOLOGY

Acute hypoxia stress induced abundant differential expression genes and alternative splicing events in heart of tilapia

(2018) Jun Hong Xia et al.   GENE

Alternative Splicing as a Target for Cancer Treatment

(2018) Nancy Martinez-Montiel et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

miRNA targeting and alternative splicing in the stress response – events hosted by membrane-less compartments

(2018) Mariya M. Kucherenko et al.   JOURNAL OF CELL SCIENCE

Temperature-dependent sex determination, realized by hormonal dynamics with enzymatic reactions sensitive to ambient temperature

(2018) Sachi Yamaguchi et al.   JOURNAL OF THEORETICAL BIOLOGY

Proteome and Transcriptome Analysis of Ovary, Intersex Gonads, and Testis Reveals Potential Key Sex Reversal/Differentiation Genes and Mechanism in Scallop Chlamys nobilis

(2018) Yu Shi et al.   MARINE BIOTECHNOLOGY

Comparative Transcriptome Analysis Reveals Growth-Related Genes in Juvenile Chinese Sea Cucumber, Russian Sea Cucumber, and Their Hybrids

(2018) Zhicheng Wang et al.   MARINE BIOTECHNOLOGY

Gonad Transcriptome Analysis of the Pacific Oyster Crassostrea gigas Identifies Potential Genes Regulating the Sex Determination and Differentiation Process

(2018) Chenyang Yue et al.   MARINE BIOTECHNOLOGY

Characterization of Spleen Transcriptome of Schizothorax prenanti during Aeromonas hydrophila Infection

(2018) Hua Ye et al.   MARINE BIOTECHNOLOGY

Characterization and Expression Dynamics of Key Genes Involved in the Gilthead Sea Bream (Sparus aurata) Cortisol Stress Response during Early Ontogeny

(2018) A. Tsalafouta et al.   MARINE BIOTECHNOLOGY

Cnidarian Primary Cell Culture as a Tool to Investigate the Effect of Thermal Stress at Cellular Level

(2018) P. Ventura et al.   MARINE BIOTECHNOLOGY

Identifying a Major QTL Associated with Salinity Tolerance in Nile Tilapia Using QTL-Seq

(2018) Xiao Hui Gu et al.   MARINE BIOTECHNOLOGY

Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish

(2018) Suxu Tan et al.   MARINE BIOTECHNOLOGY

Transcriptome-Guided Identification of Carbohydrate Active Enzymes (CAZy) from the Christmas Island Red Crab, Gecarcoidea natalis and a Vote for the Inclusion of Transcriptome-Derived Crustacean CAZys in Comparative Studies

(2018) Han Ming Gan et al.   MARINE BIOTECHNOLOGY

Gonadal Transcriptome Analysis of Pacific Abalone Haliotis discus discus: Identification of Genes Involved in Germ Cell Development

(2018) Lingyun Yu et al.   MARINE BIOTECHNOLOGY

Analysis of alternative splicing events by RNA sequencing in the ovaries of Xiang pig at estrous and diestrous

(2018) Liang-Ting Tang et al.   THERIOGENOLOGY

Genetic variants in mRNA untranslated regions

(2018) Maristella Steri et al.   Wiley Interdisciplinary Reviews-RNA

Transcriptomic responses to low temperature stress in the Nile tilapia, Oreochromis niloticus

(2018) Tao Zhou et al.   FISH & SHELLFISH IMMUNOLOGY

Regulating the Regulators: The Control of Transcription Factors in Plant Defense Signaling

(2018) Danny Ng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Heat stress induced alternative splicing in catfish as determined by transcriptome analysis

(2018) Suxu Tan et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Alternative Pre-mRNA Splicing in Mammals and Teleost Fish: A Effective Strategy for the Regulation of Immune Responses Against Pathogen Infection

(2017) Ming Chang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Alternative Splicing Transcripts of Zebrafish LGP2 Gene Differentially Contribute to IFN Antiviral Response

(2017) Qi-Min Zhang et al.   JOURNAL OF IMMUNOLOGY

Genome-Wide QTL Analysis Identified Significant Associations Between Hypoxia Tolerance and Mutations in the GPR132 and ABCG4 Genes in Nile Tilapia

(2017) Hong Lian Li et al.   MARINE BIOTECHNOLOGY

QTL Mapping for Resistance to Iridovirus in Asian Seabass Using Genotyping-by-Sequencing

(2017) Le Wang et al.   MARINE BIOTECHNOLOGY

Copy Number Variations in Tilapia Genomes

(2017) Bi Jun Li et al.   MARINE BIOTECHNOLOGY

De Novo Transcriptome Characterization and Growth-Related Gene Expression Profiling of Diploid and Triploid Bighead Catfish (Clarias macrocephalus Günther, 1864)

(2017) Satid Chatchaiphan et al.   MARINE BIOTECHNOLOGY

Transcriptome-Based Identification of the Desiccation Response Genes in Marine Red Algae Pyropia tenera (Rhodophyta) and Enhancement of Abiotic Stress Tolerance by PtDRG2 in Chlamydomonas

(2017) Sungoh Im et al.   MARINE BIOTECHNOLOGY

Comparative Transcriptome Analysis Provides Insights into Differentially Expressed Genes and Long Non-Coding RNAs between Ovary and Testis of the Mud Crab (Scylla paramamosain)

(2017) Xiaolong Yang et al.   MARINE BIOTECHNOLOGY

Effects of Oxygen Availability on Oxidative Stress Biomarkers in the Mediterranean Mussel Mytilus galloprovincialis

(2017) Alessia Giannetto et al.   MARINE BIOTECHNOLOGY

RNA-Seq Analysis of the Antioxidant Status and Immune Response of Portunus trituberculatus Following Aerial Exposure

(2017) Yuquan Li et al.   MARINE BIOTECHNOLOGY

Alternative splicing as a regulator of development and tissue identity

(2017) Francisco E. Baralle et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them

(2017) Kathrin Leppek et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Functions for fission yeast splicing factors SpSlu7 and SpPrp18 in alternative splice-site choice and stress-specific regulated splicing

(2017) Geetha Melangath et al.   PLoS One

Characterization and functional analysis of hypoxia-inducible factor HIF1α and its inhibitor HIF1αn in tilapia

(2017) Hong Lian Li et al.   PLoS One

A novel and stress adaptive alternative oxidase derived from alternative splicing of duplicated exon in oyster Crassostrea virginica

(2017) Ming Liu et al.   Scientific Reports

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics

(2016) Viktor Jonsson et al.   BMC GENOMICS

The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster

(2016) Ana Marija Jakšić et al.   GENETICS

Genome-Wide Analysis of Alternative Splicing Provides Insights into Stress Adaptation of the Pacific Oyster

(2016) Baoyu Huang et al.   MARINE BIOTECHNOLOGY

Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq

(2016) Stephen W. Hartley et al.   NUCLEIC ACIDS RESEARCH

Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish

(2016) Peng Hu et al.   Scientific Reports

The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster

(2016) Ana Marija Jakšić et al.   GENETICS

Hibernation-specific alternative splicing of the mRNA encoding cold-inducible RNA-binding protein in the hearts of hamsters

(2015) Yuuki Sano et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments

(2015) Stephen W. Hartley et al.   BMC BIOINFORMATICS

Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding

(2015) Shashank Tripathi et al.   Cell Host & Microbe

Analysis of differential gene expression under low-temperature stress in Nile tilapia (Oreochromis niloticus) using digital gene expression

(2015) Changgeng Yang et al.   GENE

Comparative transcriptome analysis of Nile tilapia (Oreochromis niloticus) in response to alkalinity stress

(2015) Y. Zhao et al.   GENETICS AND MOLECULAR RESEARCH

period and timeless mRNA Splicing Profiles under Natural Conditions in Drosophila melanogaster

(2015) Stefano Montelli et al.   JOURNAL OF BIOLOGICAL RHYTHMS

RNA mis-splicing in disease

(2015) Marina M. Scotti et al.   NATURE REVIEWS GENETICS

Temperature compensation and temperature sensation in the circadian clock

(2015) Philip B. Kidd et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative splicing of Drosophila Nmnat functions as a switch to enhance neuroprotection under stress

(2015) Kai Ruan et al.   Nature Communications

Signatures of selection in tilapia revealed by whole genome resequencing

(2015) Jun Hong Xia et al.   Scientific Reports

Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella)

(2015) Quanyuan Wan et al.   Scientific Reports

Transcriptome Profiling and Molecular Pathway Analysis of Genes in Association with Salinity Adaptation in Nile Tilapia Oreochromis niloticus

(2015) Zhixin Xu et al.   PLoS One

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Identification, characterization and nutritional regulation of two isoforms of acyl-coenzyme A oxidase 1 gene in Nile tilapia (Oreochromis niloticus)

(2014) An-Yuan He et al.   GENE

Induction of soluble AChE expression via alternative splicing by chemical stress in Drosophila melanogaster

(2014) Young Ho Kim et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

SMART: recent updates, new developments and status in 2015

(2014) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Stress-Induced Alternative Splice Forms of MDM2 and MDMX Modulate the p53-Pathway in Distinct Ways

(2014) Aishwarya G. Jacob et al.   PLoS One

Heat Stress Upregulates the Expression of TLR4 and Its Alternative Splicing Variant in Bama Miniature Pigs

(2014) Xiang-hong JU et al.   Journal of Integrative Agriculture

Integrated physiology and systems biology of PPARα

(2014) Sander Kersten   Molecular Metabolism

Transcriptomic characterization of cold acclimation in larval zebrafish

(2013) Yong Long et al.   BMC GENOMICS

Temperature-dependent regulation of flowering by antagonistic FLM variants

(2013) David Posé et al.   NATURE

PPAR-α as a Key Nutritional and Environmental Sensor for Metabolic Adaptation

(2013) Alejandra V. Contreras et al.   Advances in Nutrition

The Astonishing Diversity of Ig Classes and B Cell Repertoires in Teleost Fish

(2013) Simon Fillatreau et al.   Frontiers in Immunology

Refocusing Peroxisome Proliferator Activated Receptor-α: A New Insight for Therapeutic Roles in Diabetes

(2013) Hannah Seok et al.   Diabetes & Metabolism Journal

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

Dissecting teleost B cell differentiation using transcription factors

(2011) Patty Zwollo   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

(2011) Anna M. Mastrangelo et al.   PLANT SCIENCE

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

(2010) Jianguo Lu et al.   MOLECULAR GENETICS AND GENOMICS

Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Multiple alternative splicing of Dmrt1 during gonadogenesis in Indian mugger, a species exhibiting temperature-dependent sex determination

(2008) Amit Anand et al.   GENE

Nuclear Hormone Receptors for Heme: REV-ERBα and REV-ERBβ Are Ligand-Regulated Components of the Mammalian Clock

(2008) Thomas P. Burris   MOLECULAR ENDOCRINOLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE