Gonad Transcriptome Analysis of the Pacific Oyster Crassostrea gigas Identifies Potential Genes Regulating the Sex Determination and Differentiation Process

Transcriptome Sequencing and Comparative Analysis of Ovary and Testis Identifies Potential Key Sex-Related Genes and Pathways in Scallop Patinopecten yessoensis

(2016) Yangping Li et al.   MARINE BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes

(2014) Vaihiti Teaniniuraitemoana et al.   BMC GENOMICS

Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation

(2014) Jia Xue et al.   IMMUNITY

Genomic Analysis of the Pacific Oyster ( Crassostrea gigas ) Reveals Possible Conservation of Vertebrate Sex Determination in a Mollusc

(2014) Na Zhang et al.   G3-Genes Genomes Genetics

Cg-SoxE and Cg-β-catenin, two new potential actors of the sex-determining pathway in a hermaphrodite lophotrochozoan, the Pacific oyster Crassostrea gigas

(2013) Christelle Santerre et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Epigenetics of sex determination and gonadogenesis

(2013) Francesc Piferrer   DEVELOPMENTAL DYNAMICS

Sexually dimorphic expression of foxl2 during gametogenesis in scallop Chlamys farreri, conserved with vertebrates

(2012) Xiao-Ling Liu et al.   DEVELOPMENT GENES AND EVOLUTION

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Gametogenesis in the Pacific Oyster Crassostrea gigas: A Microarrays-Based Analysis Identifies Sex and Stage Specific Genes

(2012) Nolwenn M. Dheilly et al.   PLoS One

Expression of a Natural Antisense Transcript of Cg-Foxl2 during the Gonadic Differentiation of the OysterCrassostrea gigas: First Demonstration in the Gonads of a Lophotrochozoa Species

(2012) C. Santerre et al.   Sexual Development

Sex and the circuitry: progress toward a systems-level understanding of vertebrate sex determination

(2012) Steven C. Munger et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Making Ends Meet: The Importance of the N- and C-Termini for the Structure, Stability, and Function of the Third SH3 Domain of CIN85

(2011) D. Philippe et al.   BIOCHEMISTRY

Suppression substractive hybridisation (SSH) and real time PCR reveal differential gene expression in the Pacific cupped oyster, Crassostrea gigas, challenged with Ostreid herpesvirus 1

(2011) T. Renault et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Spermadhesins: A new protein family. Facts, hypotheses and perspectives

(2010) E. Töpfer-Petersen et al.   ANDROLOGIA

Non-coding RNAs and their epigenetic regulatory mechanisms

(2010) Huihui Zhou et al.   BIOLOGY OF THE CELL

Regulatory actions of neuropeptides and peptide hormones on the reproduction of molluscsThe present review is one of a series of occasional review articles that have been invited by the Editors and will feature the broad range of disciplines and expertise represented in our Editorial Advisory Board.

(2010) Fumihiro Morishita et al.   CANADIAN JOURNAL OF ZOOLOGY

Sex Determination: Genetic Models for Oysters

(2010) P. W. Hedrick et al.   JOURNAL OF HEREDITY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Emerging Roles of Ruk/CIN85 in Vesicle-Mediated Transport, Adhesion, Migration and Malignancy

(2010) Serhiy Havrylov et al.   TRAFFIC

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Molecular cloning and gene expression of Cg-Foxl2 during the development and the adult gametogenetic cycle in the oyster Crassostrea gigas

(2009) Amine Naimi et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Gametogenesis, reproductive investment, and spawning behavior of the Pacific giant oyster Crassostrea gigas: evidence of an environment-dependent strategy

(2008) M. Enríquez-Díaz et al.   AQUACULTURE INTERNATIONAL

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Identification and expression of a factor of the DM family in the oyster Crassostrea gigas

(2008) Amine Naimi et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Novel coiled-coil cell division factor ZapB stimulates Z ring assembly and cell division

(2008) Gitte Ebersbach et al.   MOLECULAR MICROBIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Non-coding RNAs, epigenetics and complexity

(2007) Fabrício F. Costa   GENE