Comparative Transcriptome Analysis Provides Insights into Differentially Expressed Genes and Long Non-Coding RNAs between Ovary and Testis of the Mud Crab (Scylla paramamosain)

Transcriptome Analysis and Differential Gene Expression on the Testis of Orange Mud Crab, Scylla olivacea, during Sexual Maturation

(2017) Khor Waiho et al.   PLoS One

The nuclear receptor E75 from the swimming crab, Portunus trituberculatus : cDNA cloning, transcriptional analysis, and putative roles on expression of ecdysteroid-related genes

(2016) Xi Xie et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Transcriptome Sequencing and Comparative Analysis of Ovary and Testis Identifies Potential Key Sex-Related Genes and Pathways in Scallop Patinopecten yessoensis

(2016) Yangping Li et al.   MARINE BIOTECHNOLOGY

Next-generation biology: Sequencing and data analysis approaches for non-model organisms

(2016) Rute R. da Fonseca et al.   Marine Genomics

Steroids and genes related to steroid biosynthesis in the female giant freshwater prawn, Macrobrachium rosenbergii

(2016) Tipsuda Thongbuakaew et al.   STEROIDS

The retinoid X receptor from mud crab: new insights into its roles in ovarian development and related signaling pathway

(2016) Jie Gong et al.   Scientific Reports

Transcriptome profiling of the eyestalk of precocious juvenile Chinese mitten crab reveals putative neuropeptides and differentially expressed genes

(2015) Zhiqiang Xu et al.   GENE

Molecular cloning and expression analysis of female sterile homeotic gene (fsh) in the oriental river prawn Macrobrachium nipponense

(2015) W.Y. Zhang et al.   GENETICS AND MOLECULAR RESEARCH

Gene expression profile analysis of testis and ovary of oriental river prawn, Macrobrachium nipponense, reveals candidate reproduction-related genes

(2015) H. Qiao et al.   GENETICS AND MOLECULAR RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Proteomic analysis of three gonad types of swamp eel reveals genes differentially expressed during sex reversal

(2015) Yue Sheng et al.   Scientific Reports

De novo Transcriptome Analysis of Portunus trituberculatus Ovary and Testis by RNA-Seq: Identification of Genes Involved in Gonadal Development

(2015) Xian-liang Meng et al.   PLoS One

Comparative Transcriptome Analysis Reveals Sex-Biased Gene Expression in Juvenile Chinese Mitten Crab Eriocheir sinensis

(2015) Yuan Liu et al.   PLoS One

Transcriptome analysis of the differences in gene expression between testis and ovary in green mud crab (Scylla paramamosain)

(2014) Jie Gao et al.   BMC GENOMICS

Characteristics of growth traits and their effects on body weight of G1 individuals in the mud crab (Scylla paramamosain)

(2014) W. Jiang et al.   GENETICS AND MOLECULAR RESEARCH

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Characterization and expression profile of Vitellogenin gene from Scylla paramamosain

(2013) Xiwei Jia et al.   GENE

Correlation of growth-related traits and their effects on body weight of the mud crab (Scylla paramamosain)

(2013) H.Y. Ma et al.   GENETICS AND MOLECULAR RESEARCH

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Comparative Transcriptome Analysis of the Accessory Sex Gland and Testis from the Chinese Mitten Crab (Eriocheir sinensis)

(2013) Lin He et al.   PLoS One

Insights into the Prostanoid Pathway in the Ovary Development of the Penaeid Shrimp Penaeus monodon

(2013) Wananit Wimuttisuk et al.   PLoS One

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Isolation of sex-specific AFLP markers in Spotted Halibut (Verasper variegatus)

(2010) Hongyu Ma et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Transcribed dark matter: meaning or myth?

(2010) C. P. Ponting et al.   HUMAN MOLECULAR GENETICS

Reproductive regulators in decapod crustaceans: an overview

(2010) G. P. C. Nagaraju   JOURNAL OF EXPERIMENTAL BIOLOGY

HP1γ function is required for male germ cell survival and spermatogenesis

(2010) Jeremy P Brown et al.   Epigenetics & Chromatin

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Profiles of gonadotropins and steroid hormone-like substances in the hemolymph of mud crabScylla paramamosainduring the reproduction cycle

(2009) Huiyang Huang et al.   MARINE AND FRESHWATER BEHAVIOUR AND PHYSIOLOGY

Identification, characterization and expression of sex-related genes in testes of the giant tiger shrimp Penaeus monodon

(2008) Rungnapa Leelatanawit et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY