Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish
Authors
Keywords
Fish, Alternative splicing, Disease infection, Immune, RNA-Seq
Journal
MARINE BIOTECHNOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Nature
Online
2018-07-16
DOI
10.1007/s10126-018-9844-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- JAK and STAT members in channel catfish: Identification, phylogenetic analysis and expression profiling after Edwardsiella ictaluri infection
- (2018) Yulin Jin et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- GWAS analysis using interspecific backcross progenies reveals superior blue catfish alleles responsible for strong resistance against enteric septicemia of catfish
- (2018) Suxu Tan et al. MOLECULAR GENETICS AND GENOMICS
- Genome-wide association analysis of intra-specific QTL associated with the resistance for enteric septicemia of catfish
- (2018) Huitong Shi et al. MOLECULAR GENETICS AND GENOMICS
- A Genome-Wide Association Study Reveals That Genes with Functions for Bone Development Are Associated with Body Conformation in Catfish
- (2017) Xin Geng et al. MARINE BIOTECHNOLOGY
- Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish
- (2017) Xiaoxiao Zhong et al. MARINE BIOTECHNOLOGY
- Identification of novel genes significantly affecting growth in catfish through GWAS analysis
- (2017) Ning Li et al. MOLECULAR GENETICS AND GENOMICS
- Alternate splicing of transcripts shape macrophage response to Mycobacterium tuberculosis infection
- (2017) Haroon Kalam et al. PLoS Pathogens
- Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence
- (2017) Qifan Zeng et al. Scientific Reports
- A genome-wide association study of heat stress-associated SNPs in catfish
- (2016) Y. Jin et al. ANIMAL GENETICS
- Multiple across-strain and within-strain QTLs suggest highly complex genetic architecture for hypoxia tolerance in channel catfish
- (2016) Xiaozhu Wang et al. MOLECULAR GENETICS AND GENOMICS
- GWAS analysis of QTL for enteric septicemia of catfish and their involved genes suggest evolutionary conservation of a molecular mechanism of disease resistance
- (2016) Tao Zhou et al. MOLECULAR GENETICS AND GENOMICS
- The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
- (2016) Zhanjiang Liu et al. Nature Communications
- A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance
- (2015) Xin Geng et al. BMC GENOMICS
- Comparative transcriptomics uncovers alternative splicing changes and signatures of selection from maize improvement
- (2015) Jun Huang et al. BMC GENOMICS
- The Role of Alternative Splicing in the Control of Immune Homeostasis and Cellular Differentiation
- (2015) Mehmet Yabas et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Regulation of Toll-like Receptor Signaling by the SF3a mRNA Splicing Complex
- (2015) Brian P. O’Connor et al. PLoS Genetics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
- (2014) Nicola Vitulo et al. BMC PLANT BIOLOGY
- Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish
- (2014) Y. Li et al. DNA RESEARCH
- Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)
- (2014) Luyang Sun et al. PLoS One
- rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
- (2014) Shihao Shen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses
- (2013) D. Staiger et al. PLANT CELL
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
- (2012) Shikai Liu et al. BMC GENOMICS
- RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus
- (2012) Chao Li et al. FISH & SHELLFISH IMMUNOLOGY
- Function of alternative splicing
- (2012) Olga Kelemen et al. GENE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Alternative splicing in plants – coming of age
- (2012) Naeem H. Syed et al. TRENDS IN PLANT SCIENCE
- Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
- (2011) Shikai Liu et al. BMC GENOMICS
- Comparative Analysis of Proteome and Transcriptome Variation in Mouse
- (2011) Anatole Ghazalpour et al. PLoS Genetics
- Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons
- (2010) Jianguo Lu et al. MOLECULAR GENETICS AND GENOMICS
- Expansion of the eukaryotic proteome by alternative splicing
- (2010) Timothy W. Nilsen et al. NATURE
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse
- (2009) Elsa Chacko et al. BMC GENOMICS
- Use of Modified Live Vaccines in Aquaculture
- (2009) Craig A. Shoemaker et al. JOURNAL OF THE WORLD AQUACULTURE SOCIETY
- Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches
- (2009) Mo Chen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The SR protein family of splicing factors: master regulators of gene expression
- (2008) Jennifer C. Long et al. BIOCHEMICAL JOURNAL
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- A General Definition and Nomenclature for Alternative Splicing Events
- (2008) Michael Sammeth et al. PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More