Identification of Genes/Proteins Related to Submergence Tolerance by Transcriptome and Proteome Analyses in Soybean

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding

(2018) Anzu Minami et al.   PLANT PHYSIOLOGY

Metabolic profiles of flooding-tolerant mechanism in early-stage soybean responding to initial stress

(2017) Xin Wang et al.   PLANT MOLECULAR BIOLOGY

Global gene expression in cotton (Gossypium hirsutum L.) leaves to waterlogging stress

(2017) Yanjun Zhang et al.   PLoS One

Elucidation of the molecular responses to waterlogging in Sesbania cannabina roots by transcriptome profiling

(2017) Cheng-Gang Ren et al.   Scientific Reports

RNAseq revealed the important gene pathways controlling adaptive mechanisms under waterlogged stress in maize

(2017) Kanika Arora et al.   Scientific Reports

Transcriptomic analysis reveals the flooding tolerant mechanism in flooding tolerant line and abscisic acid treated soybean

(2016) Xiaojian Yin et al.   PLANT MOLECULAR BIOLOGY

Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq

(2016) Wei Chen et al.   Frontiers in Plant Science

Characterization of proteins in soybean roots under flooding and drought stresses

(2015) MyeongWon Oh et al.   Journal of Proteomics

A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets

(2015) Mikhail M. Savitski et al.   MOLECULAR & CELLULAR PROTEOMICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Phytohormone-producing fungal endophytes and hardwood-derived biochar interact to ameliorate heavy metal stress in soybeans

(2014) Muhammad Waqas et al.   BIOLOGY AND FERTILITY OF SOILS

IQuant: An automated pipeline for quantitative proteomics based upon isobaric tags

(2014) Bo Wen et al.   PROTEOMICS

Label-Free Quantitative Proteomic Analysis of Abscisic Acid Effect in Early-Stage Soybean under Flooding

(2013) Setsuko Komatsu et al.   JOURNAL OF PROTEOME RESEARCH

Genome-Wide Expression of Transcriptomes and Their Co-Expression Pattern in Subtropical Maize (Zea mays L.) under Waterlogging Stress

(2013) Nepolean Thirunavukkarasu et al.   PLoS One

Mapping of Quantitative Trait Loci Associated with Resistance to and Flooding Tolerance in Soybean

(2012) V. T. Nguyen et al.   CROP SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Making sense of low oxygen sensing

(2012) Julia Bailey-Serres et al.   TRENDS IN PLANT SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Mass Spectrometry-Based Analysis of Proteomic Changes in the Root Tips of Flooded Soybean Seedlings

(2011) Yohei Nanjo et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics Techniques for the Development of Flood Tolerant Crops

(2011) Setsuko Komatsu et al.   JOURNAL OF PROTEOME RESEARCH

Human contribution to more-intense precipitation extremes

(2011) Seung-Ki Min et al.   NATURE

Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia

(2011) Reena Narsai et al.   NEW PHYTOLOGIST

Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia

(2011) Seung Cho Lee et al.   NEW PHYTOLOGIST

Transcriptional responses to flooding stress in roots including hypocotyl of soybean seedlings

(2011) Yohei Nanjo et al.   PLANT MOLECULAR BIOLOGY

Comparative Proteomic Analysis of Early-Stage Soybean Seedlings Responses to Flooding by Using Gel and Gel-Free Techniques

(2010) Yohei Nanjo et al.   JOURNAL OF PROTEOME RESEARCH

Activities of enzymes of fermentation pathways in the leaves and roots of contrasting cultivars of sorghum (Sorghum Bicolor L.) during flooding

(2010) Veena Jain et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

A Comprehensive Analysis of the Soybean Genes and Proteins Expressed under Flooding Stress using Transcriptome and Proteome Techniques

(2009) Setsuko Komatsu et al.   JOURNAL OF PROTEOME RESEARCH

Proteome Analysis of Early-Stage Soybean Seedlings under Flooding Stress

(2009) Akiko Hashiguchi et al.   JOURNAL OF PROTEOME RESEARCH

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

QTL analysis of seed-flooding tolerance in soybean (Glycine max [L.] Merr.)

(2009) Takashi Sayama et al.   PLANT SCIENCE

Mapping of three QTLs that regulate internode elongation in deepwater rice

(2008) Yoko Hattori et al.   BREEDING SCIENCE