RNAseq revealed the important gene pathways controlling adaptive mechanisms under waterlogged stress in maize

Transcript profiles in cortical cells of maize primary root during ethylene-induced lysigenous aerenchyma formation under aerobic conditions

(2015) Hirokazu Takahashi et al.   ANNALS OF BOTANY

Waterlogging tolerance is associated with root porosity in barley (Hordeum vulgare L.)

(2015) Sue Broughton et al.   MOLECULAR BREEDING

The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genesRAP2.12,RAP2.2andRAP2.3

(2015) Csaba Papdi et al.   PLANT JOURNAL

Targeted Mutagenesis, Precise Gene Editing, and Site-Specific Gene Insertion in Maize Using Cas9 and Guide RNA

(2015) Sergei Svitashev et al.   PLANT PHYSIOLOGY

Programmed Cell Death Controlled by ANAC033/SOMBRERO Determines Root Cap Organ Size in Arabidopsis

(2014) Matyáš Fendrych et al.   CURRENT BIOLOGY

Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors

(2014) Daniel J. Gibbs et al.   MOLECULAR CELL

Effects of waterlogging on the yield and growth of summer maize under field conditions

(2013) Baizhao Ren et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Ethylene promotes induction of aerenchyma formation and ethanolic fermentation in waterlogged roots of Dendranthema spp.

(2013) Dongmei Yin et al.   MOLECULAR BIOLOGY REPORTS

Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma

(2013) Leilei Chen et al.   NATURE MEDICINE

Characterization of the Phosphofructokinase Gene Family in Rice and Its Expression Under Oxygen Deficiency Stress

(2013) Angelika Mustroph et al.   Frontiers in Plant Science

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis

(2012) Joshua M. Edwards et al.   JOURNAL OF EXPERIMENTAL BOTANY

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays)

(2012) TOMOMI ABIKO et al.   PLANT CELL AND ENVIRONMENT

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

The hypoxia responsive transcription factor genes ERF71/HRE2 and ERF73/HRE1 of Arabidopsis are differentially regulated by ethylene

(2011) Natalia Hess et al.   PHYSIOLOGIA PLANTARUM

Contrasting dynamics of radial O2-loss barrier induction and aerenchyma formation in rice roots of two lengths

(2010) Katsuhiro Shiono et al.   ANNALS OF BOTANY

RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

(2010) E. Lalonde et al.   GENOME RESEARCH

Intronic Polymorphisms Affecting Alternative Splicing of Human Dopamine D2 Receptor Are Associated with Cocaine Abuse

(2010) Robert A Moyer et al.   NEUROPSYCHOPHARMACOLOGY

Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses

(2010) Imene Rajhi et al.   NEW PHYTOLOGIST

Aerenchyma formation in the rice stem and its promotion by H2O2

(2010) Bianka Steffens et al.   NEW PHYTOLOGIST

HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana

(2010) Francesco Licausi et al.   PLANT JOURNAL

The plant N-end rule pathway: structure and functions

(2010) Emmanuelle Graciet et al.   TRENDS IN PLANT SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Flooding tolerance: suites of plant traits in variable environments

(2009) T. D. Colmer et al.   FUNCTIONAL PLANT BIOLOGY

Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes

(2008) S. Farage-Barhom et al.   JOURNAL OF EXPERIMENTAL BOTANY