Genomic biosurveillance of forest invasive alien enemies: A story written in code

Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum

(2019) Angela L. Dale et al.   mBio

Inner Workings: Portable DNA sequencer helps farmers stymie devastating viruses

(2019) Leah Shaffer   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-enhanced detection and identification of fungal pathogens responsible for pine and poplar rust diseases

(2019) Marie-Josée Bergeron et al.   PLoS One

Deciphering the worldwide invasion of the Asian long-horned beetle: a recurrent invasion process from the native area together with a bridgehead effect

(2019) Marion Javal et al.   MOLECULAR ECOLOGY

Linking genotype to phenotype to identify genetic variation relating to host susceptibility in the mountain pine beetle system

(2019) Catherine I. Cullingham et al.   Evolutionary Applications

A needle in a haystack: a multigene TaqMan assay for the detection of Asian gypsy moths in bulk pheromone trap samples

(2019) Don Stewart et al.   BIOLOGICAL INVASIONS

Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum

(2019) Niklaus J. Grünwald et al.   Annual Review of Phytopathology

Mycorrhiza: genotype assignment using phylogenetic networks

(2019) Jeremy Georges-Filteau et al.   BIOINFORMATICS

Environmental Adaptations, Ecological Filtering, and Dispersal Central to Insect Invasions

(2018) David Renault et al.   Annual Review of Entomology

Marine Environmental Epigenetics

(2018) Jose M. Eirin-Lopez et al.   Annual Review of Marine Science

Interspecific Gene Exchange as a Driver of Adaptive Evolution in Fungi

(2018) Alice Feurtey et al.   Annual Review of Microbiology

Metabarcoding: A powerful tool to investigate microbial communities and shape future plant protection strategies

(2018) Ahmed Abdelfattah et al.   BIOLOGICAL CONTROL

Understanding the role of DNA methylation in successful biological invasions: a review

(2018) Nicola A. Hawes et al.   BIOLOGICAL INVASIONS

The mechanisms of epigenetic inheritance: how diverse are they?

(2018) Oleg N. Tikhodeyev   BIOLOGICAL REVIEWS

Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

(2018) Marianne Elliott et al.   BMC GENOMICS

Optimization and performance testing of a sequence processing pipeline applied to detection of nonindigenous species

(2018) Ryan Scott et al.   Evolutionary Applications

Where did mountain pine beetle populations in Jasper Park come from? Tracking beetles with genetics

(2018) Stephen A.L. Trevoy et al.   FORESTRY CHRONICLE

Ecological Genomics: genes in ecology and ecology in genes

(2018) Theodore J. Morgan et al.   GENOME

The rapid spread of Leptoglossus occidentalis in Europe: a bridgehead invasion

(2018) V. Lesieur et al.   JOURNAL OF PEST SCIENCE

Improved biosecurity surveillance of non-native forest insects: a review of current methods

(2018) Therese M. Poland et al.   JOURNAL OF PEST SCIENCE

Biosurveillance of forest insects: part II—adoption of genomic tools by end user communities and barriers to integration

(2018) Pierre Bilodeau et al.   JOURNAL OF PEST SCIENCE

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Detecting host-parasitoid interactions in an invasive Lepidopteran using nested tagging DNA metabarcoding

(2018) James J. N. Kitson et al.   MOLECULAR ECOLOGY

Evaluating sample size to estimate genetic management metrics in the genomics era

(2018) Elizabeth P. Flesch et al.   Molecular Ecology Resources

Wild GWAS-association mapping in natural populations

(2018) Anna W. Santure et al.   Molecular Ecology Resources

A fast likelihood solution to the genetic clustering problem

(2018) Marie-Pauline Beugin et al.   Methods in Ecology and Evolution

An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex

(2018) Soňa Vyskočilová et al.   Scientific Reports

Genome-Enhanced Detection and Identification (GEDI) of plant pathogens

(2018) Nicolas Feau et al.   PeerJ

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

(2018) Aaron Pomerantz et al.   GigaScience

The ash dieback invasion of Europe was founded by two genetically divergent individuals

(2018) Mark McMullan et al.   Nature Ecology & Evolution

Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis

(2018) Etienne Danchin et al.   BIOLOGICAL REVIEWS

The impact of high throughput sequencing on plant health diagnostics

(2018) Ian P. Adams et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Community composition and distribution of Phytophthora species across adjacent native and non-native forests of South Africa

(2018) Tanay Bose et al.   Fungal Ecology

Stress related epigenetic changes may explain opportunistic success in biological invasions in Antipode mussels

(2018) Alba Ardura et al.   Scientific Reports

Methylation divergence of invasive Ciona ascidians: Significant population structure and local environmental influence

(2018) Ping Ni et al.   Ecology and Evolution

Epigenetics in Insects: Genome Regulation and the Generation of Phenotypic Diversity

(2018) Karl M. Glastad et al.   Annual Review of Entomology

Potential limits to the benefits of admixture during biological invasion

(2018) Brittany S. Barker et al.   MOLECULAR ECOLOGY

Assessing the potential of genotyping-by-sequencing-derived single nucleotide polymorphisms to identify the geographic origins of intercepted gypsy moth (Lymantria dispar ) specimens: A proof-of-concept study

(2017) Sandrine Picq et al.   Evolutionary Applications

MinION as part of a biomedical rapidly deployable laboratory

(2017) Mathias C. Walter et al.   JOURNAL OF BIOTECHNOLOGY

Genomic Studies of Local Adaptation in Natural Plant Populations

(2017) Victoria L Sork   JOURNAL OF HEREDITY

Correction to: Complex invasion history of the Asian long-horned beetle: fifteen years after first detection in Europe

(2017) Marion Javal et al.   JOURNAL OF PEST SCIENCE

Genetic and genomic evidence of niche partitioning and adaptive radiation in mountain pine beetle fungal symbionts

(2017) Dario I. Ojeda Alayon et al.   MOLECULAR ECOLOGY

Rapid response to changing environments during biological invasions: DNA methylation perspectives

(2017) Xuena Huang et al.   MOLECULAR ECOLOGY

Effective mosquito and arbovirus surveillance using metabarcoding

(2017) J. Batovska et al.   Molecular Ecology Resources

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

(2017) Alison G. Nazareno et al.   Molecular Ecology Resources

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

(2017) Joshua Quick et al.   Nature Protocols

Say hello to my little friends: how microbiota can modulate tree health

(2017) Nicolas Feau et al.   NEW PHYTOLOGIST

A signature of tree health? Shifts in the microbiome and the ecological drivers of horse chestnut bleeding canker disease

(2017) Britt Koskella et al.   NEW PHYTOLOGIST

Best Practices for Population Genetic Analyses

(2017) N. J. Grünwald et al.   PHYTOPATHOLOGY

On site DNA barcoding by nanopore sequencing

(2017) Michele Menegon et al.   PLoS One

A safety rule approach to surveillance and eradication of biological invasions

(2017) Denys Yemshanov et al.   PLoS One

A genome Tree of Life for the Fungi kingdom

(2017) JaeJin Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleic acid purification from plants, animals and microbes in under 30 seconds

(2017) Yiping Zou et al.   PLOS BIOLOGY

Codon optimization underpins generalist parasitism in fungi

(2017) Thomas Badet et al.   eLife

Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach

(2017) Claudia Bartoli et al.   Frontiers in Plant Science

Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution

(2017) Clémence Plissonneau et al.   Frontiers in Plant Science

Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

(2017) György Sipos et al.   Nature Ecology & Evolution

Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes

(2017) Katy E. Klymus et al.   PLoS One

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

(2017) Sarah L. Castro-Wallace et al.   Scientific Reports

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Population Genomics of Fungal and Oomycete Pathogens

(2016) Niklaus J. Grünwald et al.   Annual Review of Phytopathology

Comparison of SNP and microsatellite genotyping panels for spatial assignment of individuals to natal range: A case study using the American black bear ( Ursus americanus )

(2016) Emily E. Puckett et al.   BIOLOGICAL CONSERVATION

Anthropogenic signature in the incidence and distribution of an emerging pathogen of poplars

(2016) Padmini Herath et al.   BIOLOGICAL INVASIONS

Genetic patterns reveal historical and contemporary dispersal of a tree pathogen

(2016) Monique L. Sakalidis et al.   BIOLOGICAL INVASIONS

Complex patterns of global spread in invasive insects: eco-evolutionary and management consequences

(2016) Jeff R. Garnas et al.   BIOLOGICAL INVASIONS

Population genetics and symbiont assemblages support opposing invasion scenarios for the red turpentine beetle (Dendroctonus valens)

(2016) Stephen J. Taerum et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

(2016) Takao Kasuga et al.   BMC GENOMICS

Interspecific hybridization impacts host range and pathogenicity of filamentous microbes

(2016) Jasper RL Depotter et al.   CURRENT OPINION IN MICROBIOLOGY

Nonnative forest insects and pathogens in the United States: Impacts and policy options

(2016) Gary M. Lovett et al.   ECOLOGICAL APPLICATIONS

Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides

(2016) Boris Jakuschkin et al.   MICROBIAL ECOLOGY

A Metabarcoding Survey on the Fungal Microbiota Associated to the Olive Fruit Fly

(2016) Antonino Malacrinò et al.   MICROBIAL ECOLOGY

Ancient and modern colonization of North America by hemlock woolly adelgid,Adelges tsugae(Hemiptera: Adelgidae), an invasive insect from East Asia

(2016) Nathan P. Havill et al.   MOLECULAR ECOLOGY

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

SNPs selected by information content outperform randomly selected microsatellite loci for delineating genetic identification and introgression in the endangered dark European honeybee (Apis mellifera mellifera )

(2016) Irene Muñoz et al.   Molecular Ecology Resources

Real-time, portable genome sequencing for Ebola surveillance

(2016) Joshua Quick et al.   NATURE

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Phenotypic interactions between tree hosts and invasive forest pathogens in the light of globalization and climate change

(2016) Jan Stenlid et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multilocus inference of species trees and DNA barcoding

(2016) Diego Mallo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA barcoding and taxonomy: dark taxa and dark texts

(2016) Roderic D. M. Page   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Metabarcoding Analysis of Phytophthora Diversity Using Genus-Specific Primers and 454 Pyrosequencing

(2016) Maria I. Prigigallo et al.   PHYTOPATHOLOGY

Metabarcoding and development of new real-time specific assays revealPhytophthoraspecies diversity in holm oak forests in eastern Spain

(2016) S. Català et al.   PLANT PATHOLOGY

A Multi-Species TaqMan PCR Assay for the Identification of Asian Gypsy Moths (Lymantria spp.) and Other Invasive Lymantriines of Biosecurity Concern to North America

(2016) Donald Stewart et al.   PLoS One

Genome-Enabled Analysis of Plant-Pathogen Migration

(2015) Erica M. Goss   Annual Review of Phytopathology

DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens

(2015) Thierry Comtet et al.   BIOLOGICAL INVASIONS

Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination

(2015) Firas Talas et al.   BMC GENOMICS

Applications of next-generation sequencing to the study of biological invasions

(2015) Marc Rius et al.   Current Zoology

Benefits of invasion prevention: Effect of time lags, spread rates, and damage persistence

(2015) Rebecca S. Epanchin-Niell et al.   ECOLOGICAL ECONOMICS

Forest genomics research and development in Canada: Priorities for developing an economic framework

(2015) Ilga Porth et al.   FORESTRY CHRONICLE

Common garden experiments in the genomic era: new perspectives and opportunities

(2015) P de Villemereuil et al.   HEREDITY

The expanding epigenetic landscape of non-model organisms

(2015) R. Bonasio   JOURNAL OF EXPERIMENTAL BIOLOGY

Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species

(2015) Jessica Stapley et al.   MOLECULAR ECOLOGY

The population biology of fungal invasions

(2015) P. Gladieux et al.   MOLECULAR ECOLOGY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The devil is in the details: genetic variation in introduced populations and its contributions to invasion

(2015) Katrina M. Dlugosch et al.   MOLECULAR ECOLOGY

Genetic reconstructions of invasion history

(2015) Melania E. Cristescu   MOLECULAR ECOLOGY

Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

(2015) Robert I. Colautti et al.   MOLECULAR ECOLOGY

Colonization History, Host Distribution, Anthropogenic Influence and Landscape Features Shape Populations of White Pine Blister Rust, an Invasive Alien Tree Pathogen

(2015) Simren Brar et al.   PLoS One

Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen

(2015) Braham Dhillon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Planted forest health: The need for a global strategy

(2015) M. J. Wingfield et al.   SCIENCE

Forest health and global change

(2015) S. Trumbore et al.   SCIENCE

Applications of next-generation sequencing to the study of biological invasions

(2015) Marc Rius et al.   Current Zoology

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

(2015) Amelia Hubbard et al.   GENOME BIOLOGY

Molecular Detection of 10 of the Most Unwanted Alien Forest Pathogens in Canada Using Real-Time PCR

(2015) Josyanne Lamarche et al.   PLoS One

Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti

(2014) Gordana Rašić et al.   BMC GENOMICS

Alien fungal species on asymptomatic live woody plant material imported into Canada

(2014) Jean A. Bérubé et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Biological invasions, climate change and genomics

(2014) Steven L. Chown et al.   Evolutionary Applications

Improving ITS sequence data for identification of plant pathogenic fungi

(2014) R. Henrik Nilsson et al.   FUNGAL DIVERSITY

A new paper-based platform technology for point-of-care diagnostics

(2014) Roman Gerbers et al.   LAB ON A CHIP

How the Mountain Pine Beetle (Dendroctonus ponderosae) Breached the Canadian Rocky Mountains

(2014) Jasmine K. Janes et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population structure of the invasive forest pathogenHymenoscyphus pseudoalbidus

(2014) Andrin Gross et al.   MOLECULAR ECOLOGY

Understanding the spectacular failure of DNA barcoding in willows (Salix): Does this result from a trans-specific selective sweep?

(2014) Diana M. Percy et al.   MOLECULAR ECOLOGY

Rapid genetic adaptation precedes the spread of an exotic plant species

(2014) Katrien Vandepitte et al.   MOLECULAR ECOLOGY

Population History and Pathways of Spread of the Plant Pathogen Phytophthora plurivora

(2014) Corine N. Schoebel et al.   PLoS One

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

How important is intraspecific genetic admixture to the success of colonising populations?

(2014) Marc Rius et al.   TRENDS IN ECOLOGY & EVOLUTION

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

(2014) C. L. Schoch et al.   Database-The Journal of Biological Databases and Curation

Stopping outbreaks with real-time genomic epidemiology

(2014) Patrick Tang et al.   Genome Medicine

Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumanniiin Birmingham, England

(2014) Mihail R Halachev et al.   Genome Medicine

A Unified Classification of Alien Species Based on the Magnitude of their Environmental Impacts

(2014) Tim M. Blackburn et al.   PLOS BIOLOGY

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Emerald Ash Borer Invasion of North America: History, Biology, Ecology, Impacts, and Management

(2013) Daniel A. Herms et al.   Annual Review of Entomology

Detecting Natural Selection in Genomic Data

(2013) Joseph J. Vitti et al.   Annual Review of Genetics

Role of propagule pressure in colonization success: disentangling the relative importance of demographic, genetic and habitat effects

(2013) R. A. Hufbauer et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Population genetic analyses provide insights on the introduction pathway and spread patterns of the North American forest pathogenHeterobasidion irregularein Italy

(2013) M. Garbelotto et al.   MOLECULAR ECOLOGY

Fungal systematics: is a new age of enlightenment at hand?

(2013) David S. Hibbett et al.   NATURE REVIEWS MICROBIOLOGY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Potential of DNA Barcoding for Detecting Quarantine Fungi

(2013) Ruifang Gao et al.   PHYTOPATHOLOGY

A Genome-Wide Association Study Identifies Genomic Regions for Virulence in the Non-Model Organism Heterobasidion annosum s.s

(2013) Kerstin Dalman et al.   PLoS One

Rapid Adaptation to Climate Facilitates Range Expansion of an Invasive Plant

(2013) R. I. Colautti et al.   SCIENCE

Evolutionary Biology for the 21st Century

(2013) Jonathan B. Losos et al.   PLOS BIOLOGY

Population Identification Using Genetic Data

(2012) Daniel John Lawson et al.   Annual Review of Genomics and Human Genetics

Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation

(2012) Christina L. Richards et al.   ECOLOGY LETTERS

A resurrection study reveals rapid adaptive evolution within populations of an invasive plant

(2012) Sonia E. Sultan et al.   Evolutionary Applications

Native invaders – challenges for science, management, policy, and society

(2012) Michael P Carey et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation

(2012) B Barrès et al.   HEREDITY

Retracing the routes of introduction of invasive species: the case of theSirex noctiliowoodwasp

(2012) E. Boissin et al.   MOLECULAR ECOLOGY

The chestnut blight fungus world tour: successive introduction events from diverse origins in an invasive plant fungal pathogen

(2012) C. DUTECH et al.   MOLECULAR ECOLOGY

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

(2012) H. R. TAYLOR et al.   Molecular Ecology Resources

Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi

(2012) Agathe Vialle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

Genome evolution in filamentous plant pathogens: why bigger can be better

(2012) Sylvain Raffaele et al.   NATURE REVIEWS MICROBIOLOGY

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

(2012) Åke Olson et al.   NEW PHYTOLOGIST

Biogeographical patterns and determinants of invasion by forest pathogens in Europe

(2012) A. Santini et al.   NEW PHYTOLOGIST

Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies

(2012) Marie L. Hale et al.   PLoS One

Impacts of biological invasions: what's what and the way forward

(2012) Daniel Simberloff et al.   TRENDS IN ECOLOGY & EVOLUTION

Emergence of the sudden oak death pathogen Phytophthora ramorum

(2012) Niklaus J. Grünwald et al.   TRENDS IN MICROBIOLOGY

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

Putative origin of clonal lineages of Amylostereum areolatum, the fungal symbiont associated with Sirex noctilio, retrieved from Pinus sylvestris, in eastern Canada

(2011) Marie-Josée Bergeron et al.   Fungal Biology

The evolution of species concepts and species recognition criteria in plant pathogenic fungi

(2011) Lei Cai et al.   FUNGAL DIVERSITY

Predicting invasion success of forest pathogenic fungi from species traits

(2011) Aurore Philibert et al.   JOURNAL OF APPLIED ECOLOGY

The influence of satellite populations of emerald ash borer on projected economic costs in U.S. communities, 2010–2020

(2011) Kent F. Kovacs et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Inferring the origin of populations introduced from a genetically structured native range by approximate Bayesian computation: case study of the invasive ladybird Harmonia axyridis

(2011) E. LOMBAERT et al.   MOLECULAR ECOLOGY

Gene genealogies reveal cryptic species and host preferences for the pine fungal pathogen Grosmannia clavigera

(2011) SEPIDEH M. ALAMOUTI et al.   MOLECULAR ECOLOGY

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer

(2011) GREGG P. ROBIDEAU et al.   Molecular Ecology Resources

Use of the Genealogical Sorting Index (GSI) to delineate species boundaries in the Neofusicoccum parvum–Neofusicoccum ribis species complex

(2011) Monique L. Sakalidis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

One fungus, one name promotes progressive plant pathology

(2011) MICHAEL J. WINGFIELD et al.   MOLECULAR PLANT PATHOLOGY

DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus

(2011) Nicolas Feau et al.   MYCOLOGIA

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The real cost of sequencing: higher than you think!

(2011) Andrea Sboner et al.   GENOME BIOLOGY

One Fungus = One Name: DNA and fungal nomenclature twenty years after PCR

(2011) John W. Taylor   IMA Fungus

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Analysis of genetic diversity in an invasive population of Asian long-horned beetles in Ontario, Canada

(2010) Maureen E. Carter et al.   CANADIAN ENTOMOLOGIST

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

Reconstructing disease outbreaks from genetic data: a graph approach

(2010) T Jombart et al.   HEREDITY

Genomic admixture increases fitness during a biological invasion

(2010) S. R. KELLER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

Reconstructing routes of invasion using genetic data: why, how and so what?

(2010) ARNAUD ESTOUP et al.   MOLECULAR ECOLOGY

Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle

(2010) AMANDA D. ROE et al.   Molecular Ecology Resources

Disentangling the role of environmental and human pressures on biological invasions across Europe

(2010) P. Pysek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

The Role of Propagule Pressure in Biological Invasions

(2009) Daniel Simberloff   Annual Review of Ecology Evolution and Systematics

Genetic analyses of the Asian longhorned beetle (Coleoptera, Cerambycidae, Anoplophora glabripennis), in North America, Europe and Asia

(2009) Maureen Carter et al.   BIOLOGICAL INVASIONS

The more you introduce the more you get: the role of colonization pressure and propagule pressure in invasion ecology

(2009) Julie L. Lockwood et al.   DIVERSITY AND DISTRIBUTIONS

Trade, transport and trouble: managing invasive species pathways in an era of globalization

(2009) Philip E. Hulme   JOURNAL OF APPLIED ECOLOGY

Evaluation of mitochondrial genes as DNA barcode for Basidiomycota

(2009) AGATHE VIALLE et al.   Molecular Ecology Resources

Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology

(2009) IAN P. ADAMS et al.   MOLECULAR PLANT PATHOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Fungal ecology catches fire

(2009) David S. Hibbett et al.   NEW PHYTOLOGIST

Evaluation of Molecular Markers for Phytophthora ramorum Detection and Identification: Testing for Specificity Using a Standardized Library of Isolates

(2009) F. N. Martin et al.   PHYTOPATHOLOGY

Standardizing the Nomenclature for Clonal Lineages of the Sudden Oak Death Pathogen,Phytophthora ramorum

(2009) Niklaus J. Grünwald et al.   PHYTOPATHOLOGY

Stream Monitoring for Detection of Phytophthora ramorum in Oregon Tanoak Forests

(2009) W. Sutton et al.   PLANT DISEASE

Fungal pathogen (mis-) identifications: A case study with DNA barcodes on Melampsora rusts of aspen and white poplar

(2009) Nicolas Feau et al.  

Point-of-Care Diagnostics for Global Health

(2008) Paul Yager et al.   Annual Review of Biomedical Engineering

Ecological impacts of non-indigenous invasive fungi as forest pathogens

(2008) Judy A. Loo   BIOLOGICAL INVASIONS

Funybase: a Fungal phylogenomic database

(2008) Sylvain Marthey et al.   BMC BIOINFORMATICS

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

Nucleic Acid–Based Pathogen Detection in Applied Plant Pathology

(2008) Paul Vincelli et al.   PLANT DISEASE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

An ecosystem services framework to support both practical conservation and economic development

(2008) H. Tallis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Ecology of Insect Invasions and Their Management

(2007) Andrew M. Liebhold et al.   Annual Review of Entomology

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY