Real-time, portable genome sequencing for Ebola surveillance

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

(2015) Daniel J. Park et al.   CELL

Buffer AVL Alone Does Not Inactivate Ebola Virus in a Representative Clinical Sample Type

(2015) Sophie J. Smither et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Temporal and spatial analysis of the 2014–2015 Ebola virus outbreak in West Africa

(2015) Miles W. Carroll et al.   NATURE

Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone

(2015) Yi-Gang Tong et al.   NATURE

Data sharing: Make outbreak research open access

(2015) Nathan L. Yozwiak et al.   NATURE

Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic

(2015) Etienne Simon-Loriere et al.   NATURE

A complete bacterial genome assembled de novo using only nanopore sequencing data

(2015) Nicholas J Loman et al.   NATURE METHODS

Improved data analysis for the MinION nanopore sequencer

(2015) Miten Jain et al.   NATURE METHODS

Molecular Evidence of Sexual Transmission of Ebola Virus

(2015) Suzanne E. Mate et al.   NEW ENGLAND JOURNAL OF MEDICINE

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

(2015) Alexander L. Greninger et al.   Genome Medicine

Poretools: a toolkit for analyzing nanopore sequence data

(2014) N. J. Loman et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

(2014) Joshua Quick et al.   GigaScience

Improving Bayesian Population Dynamics Inference: A Coalescent-Based Model for Multiple Loci

(2012) M. S. Gill et al.   MOLECULAR BIOLOGY AND EVOLUTION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS