Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species

Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa

(2015) Kathryn A. Hodgins et al.   MOLECULAR ECOLOGY

Evolution of phenotypic plasticity in colonizing species

(2015) Russell Lande   MOLECULAR ECOLOGY

Invasion genetics of the Bermuda buttercup (Oxalis pes-caprae): complex intercontinental patterns of genetic diversity, polyploidy and heterostyly characterize both native and introduced populations

(2015) Victoria Ferrero et al.   MOLECULAR ECOLOGY

The influence of numbers on invasion success

(2015) Tim M. Blackburn et al.   MOLECULAR ECOLOGY

Population Genomics of Transposable Elements inDrosophila

(2014) Maite G. Barrón et al.   Annual Review of Genetics

Genome sequence of Anopheles sinensis provides insight into genetics basis of mosquito competence for malaria parasites

(2014) Dan Zhou et al.   BMC GENOMICS

Reconstructing complex regions of genomes using long-read sequencing technology

(2014) J. Huddleston et al.   GENOME RESEARCH

Bursts of transposable elements as an evolutionary driving force

(2014) A. Belyayev   JOURNAL OF EVOLUTIONARY BIOLOGY

An Adaptive Transposable Element Insertion in the Regulatory Region of the EO Gene in the Domesticated Silkworm, Bombyx mori

(2014) Wei Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid genetic adaptation precedes the spread of an exotic plant species

(2014) Katrien Vandepitte et al.   MOLECULAR ECOLOGY

The transposable elementBari-Jhehmediates oxidative stress response in Drosophila

(2014) Lain Guio et al.   MOLECULAR ECOLOGY

Functional annotation of noncoding sequence variants

(2014) Graham R S Ritchie et al.   NATURE METHODS

Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements

(2014) Rajiv C. McCoy et al.   PLoS One

Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation

(2014) V. Soria-Carrasco et al.   SCIENCE

Transposable element islands facilitate adaptation to novel environments in an invasive species

(2014) Lukas Schrader et al.   Nature Communications

A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila

(2014) Lidia Mateo et al.   PLoS Genetics

Tapping the Promise of Genomics in Species with Complex, Nonmodel Genomes

(2013) Candice N. Hirsch et al.   Annual Review of Plant Biology

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

(2013) Rose L. Andrew et al.   EVOLUTION

Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales

(2013) Kate L. Hertweck   GENOME

Lizards and LINEs: Selection and Demography Affect the Fate of L1 Retrotransposons in the Genome of the Green Anole (Anolis carolinensis)

(2013) Marc Tollis et al.   Genome Biology and Evolution

Transposable Elements: Powerful Contributors to Angiosperm Evolution and Diversity

(2013) Keith R. Oliver et al.   Genome Biology and Evolution

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

(2013) Paul A. Hohenlohe et al.   MOLECULAR ECOLOGY

Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland

(2013) Thomas A. White et al.   MOLECULAR ECOLOGY

Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping?

(2013) Jacob E. Crawford et al.   MOLECULAR ECOLOGY

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Life history trade-offs at a single locus maintain sexually selected genetic variation

(2013) Susan E. Johnston et al.   NATURE

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

(2013) Tanja Slotte et al.   NATURE GENETICS

Heritable and Precise Zebrafish Genome Editing Using a CRISPR-Cas System

(2013) Woong Y. Hwang et al.   PLoS One

Rapid Adaptation to Climate Facilitates Range Expansion of an Invasive Plant

(2013) R. I. Colautti et al.   SCIENCE

Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene

(2013) C. R. Linnen et al.   SCIENCE

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Transposable Elements Re-Wire and Fine-Tune the Transcriptome

(2013) Michael Cowley et al.   PLoS Genetics

Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs

(2013) Matthew J. Hangauer et al.   PLoS Genetics

Invader population speeds up life history during colonization

(2012) Per-Arne Amundsen et al.   BIOLOGICAL INVASIONS

Evidence for an epigenetic role in inbreeding depression

(2012) P. Vergeer et al.   Biology Letters

Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation

(2012) Christina L. Richards et al.   ECOLOGY LETTERS

The impact of transposable elements on eukaryotic genomes: From genome size increase to genetic adaptation to stressful environments

(2012) Benoît Chénais et al.   GENE

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Advances in plant genome sequencing

(2012) John P. Hamilton et al.   PLANT JOURNAL

Transgenerational Effects of Stress Exposure on Offspring Phenotypes in Apomictic Dandelion

(2012) Koen J.F. Verhoeven et al.   PLoS One

Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis

(2012) C. Melamed-Bessudo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How does adaptation sweep through the genome? Insights from long-term selection experiments

(2012) M. K. Burke   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

Genomic impact of eukaryotic transposable elements

(2012) Irina R Arkhipova et al.   Mobile DNA

Families of transposable elements, population structure and the origin of species

(2011) Jerzy Jurka et al.   Biology Direct

Osvaldo and Isis retrotransposons as markers of the Drosophila buzzatii colonisation in Australia

(2011) María Pilar García Guerreiro et al.   BMC EVOLUTIONARY BIOLOGY

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes

(2011) Mateusz Janicki et al.   CHROMOSOME RESEARCH

Do bottlenecks increase additive genetic variance?

(2011) Heather R. Taft et al.   CONSERVATION GENETICS

Do invasive species show higher phenotypic plasticity than native species and, if so, is it adaptive? A meta-analysis

(2011) Amy Michelle Davidson et al.   ECOLOGY LETTERS

Ploidy influences rarity and invasiveness in plants

(2011) Maharaj K. Pandit et al.   JOURNAL OF ECOLOGY

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

(2011) J. D. Hollister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Next generation sequencing in epigenetics: Insights and challenges

(2011) Emma Meaburn et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

(2011) Keith R Oliver et al.   Mobile DNA

Challenges and opportunities of genetic approaches to biological conservation

(2010) Richard Frankham   BIOLOGICAL CONSERVATION

A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution

(2010) C. Biemont   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Copy Number Variation Shapes Genome Diversity in Arabidopsis Over Immediate Family Generational Scales

(2010) Seth DeBolt   Genome Biology and Evolution

Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution

(2010) M. Volker et al.   GENOME RESEARCH

Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing

(2010) J. K. Teer et al.   GENOME RESEARCH

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae)

(2010) MATTHEW J. HEGARTY et al.   MOLECULAR ECOLOGY

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

How and Why Chromosome Inversions Evolve

(2010) Mark Kirkpatrick   PLOS BIOLOGY

Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila

(2010) Josefa González et al.   PLoS Genetics

Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus

(2010) Joshua M. Schmidt et al.   PLoS Genetics

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

(2009) Florian Maumus et al.   BMC GENOMICS

A Recent Adaptive Transposable Element Insertion Near Highly Conserved Developmental Loci in Drosophila melanogaster

(2009) J. Gonzalez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)

(2008) M. L. Ainouche et al.   BIOLOGICAL INVASIONS

Transposable elements as drivers of genomic and biological diversity in vertebrates

(2008) Astrid Böhne et al.   CHROMOSOME RESEARCH

Population Bottlenecks Increase Additive Genetic Variance But Do Not Break a Selection Limit in Rain Forest Drosophila

(2008) B. van Heerwaarden et al.   GENETICS

The Effects of Recombination Rate on the Distribution and Abundance of Transposable Elements

(2008) E. S. Dolgin et al.   GENETICS

The mariner transposable element in natural populations of Drosophila simulans

(2008) S Picot et al.   HEREDITY

Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata

(2008) S. Lockton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster

(2008) Josefa González et al.   PLOS BIOLOGY

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY