Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti

Probing functional polymorphisms in the dengue vector, Aedes aegypti

(2013) Mariangela Bonizzoni et al.   BMC GENOMICS

Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing

(2013) Junwen Wang et al.   BMC GENOMICS

HUMAN IMPACTS HAVE SHAPED HISTORICAL AND RECENT EVOLUTION INAEDES AEGYPTI, THE DENGUE AND YELLOW FEVER MOSQUITO

(2013) Julia E. Brown et al.   EVOLUTION

Novel Estimates ofAedes aegypti(Diptera: Culicidae) Population Size and Adult Survival Based onWolbachiaReleases

(2013) Scott A. Ritchie et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Combined analyses of kinship andFSTsuggest potential drivers of chaotic genetic patchiness in high gene-flow populations

(2013) Matthew Iacchei et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel

(2013) J. M. Pujolar et al.   Molecular Ecology Resources

The global distribution and burden of dengue

(2013) Samir Bhatt et al.   NATURE

RESTseq – Efficient Benchtop Population Genomics with RESTriction Fragment SEQuencing

(2013) Eckart Stolle et al.   PLoS One

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization

(2013) Marie Cariou et al.   Ecology and Evolution

Gene flow networks among AmericanAedes aegyptipopulations

(2012) Anders Gonçalves da Silva et al.   Evolutionary Applications

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

Universal primers for fluorescent labelling of PCR fragments-an efficient and cost-effective approach to genotyping by fluorescence

(2012) M. J. BLACKET et al.   Molecular Ecology Resources

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Spatial Waves of Advance with Bistable Dynamics: Cytoplasmic and Genetic Analogues of Allee Effects

(2011) N. H. Barton et al.   AMERICAN NATURALIST

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Changes in the Genetic Structure ofAedes aegypti(Diptera: Culicidae) Populations in Queensland, Australia, Across Two Seasons: Implications for Potential Mosquito Releases

(2011) N. M. Endersby et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Successful establishment of Wolbachia in Aedes populations to suppress dengue transmission

(2011) A. A. Hoffmann et al.   NATURE

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Worldwide patterns of genetic differentiation imply multiple 'domestications' of Aedes aegypti, a major vector of human diseases

(2011) J. E. Brown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Population genetic structure of Aedes aegypti, the principal vector of dengue viruses

(2010) Ludmel Urdaneta-Marquez et al.   INFECTION GENETICS AND EVOLUTION

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

Considering spatial and temporal scale in landscape-genetic studies of gene flow

(2010) COREY DEVIN ANDERSON et al.   MOLECULAR ECOLOGY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Genome-based polymorphic microsatellite development and validation in the mosquito Aedes aegypti and application to population genetics in Haiti

(2009) Diane D Lovin et al.   BMC GENOMICS

Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

(2009) M Tokarska et al.   HEREDITY

Genetic Structure ofAedes aegyptiin Australia and Vietnam Revealed by Microsatellite and Exon Primed Intron Crossing Markers Suggests Feasibility of Local Control Options

(2009) N. M. Endersby et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One