Effective mosquito and arbovirus surveillance using metabarcoding

Simultaneous identification of host, ectoparasite and pathogen DNA via in-solution capture

(2016) Michael G. Campana et al.   Molecular Ecology Resources

A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies

(2016) Arnaud G. Blouin et al.   Molecular Ecology Resources

Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding

(2016) Arthur Kocher et al.   Molecular Ecology Resources

Molecular identification of mosquitoes (Diptera: Culicidae) in southeastern Australia

(2016) Jana Batovska et al.   Ecology and Evolution

Using Next-Generation Sequencing for DNA Barcoding: Capturing Allelic Variation in ITS2

(2016) Jana Batovska et al.   G3-Genes Genomes Genetics

Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples

(2016) Judith Schneider et al.   PLoS One

DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens

(2015) Thierry Comtet et al.   BIOLOGICAL INVASIONS

Third generation sequencing: technology and its potential impact on evolutionary biodiversity research

(2015) Christoph Bleidorn   SYSTEMATICS AND BIODIVERSITY

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

(2015) Alexander L. Greninger et al.   Genome Medicine

The global distribution of the arbovirus vectors Aedes aegypti and Ae. albopictus

(2015) Moritz UG Kraemer et al.   eLife

Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities

(2015) Dominique A. Cowart et al.   PLoS One

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples

(2014) Claudia Bragalini et al.   DNA RESEARCH

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

(2014) J. Piñol et al.   Molecular Ecology Resources

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

(2014) J. Gibson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

Mosquito-borne arbovirus surveillance at selected sites in diverse ecological zones of Kenya; 2007 – 2012

(2013) Caroline Ochieng et al.   Virology Journal

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

New Technique to Count Mosquito Adults: Using ImageJ Software to Estimate Number of Mosquito Adults in a Trap

(2012) Banugopan Kesavaraju et al.   JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Rapid Molecular Strategy for Orbivirus Detection and Characterization

(2011) Gustavo Palacios et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing

(2011) Jan Pawlowski et al.   PLoS One

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Molecular evolutionary dynamics of Ross River virus and implications for vaccine efficacy

(2009) A. Jones et al.   JOURNAL OF GENERAL VIROLOGY

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Potential mosquito vectors of arboviruses in Portugal: species, distribution, abundance and West Nile infection

(2008) A.P.G. Almeida et al.   TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE