DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Influence of Artifact Removal on Rare Species Recovery in Natural Complex Communities Using High-Throughput Sequencing

(2014) Aibin Zhan et al.   PLoS One

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Achieving Conservation Science that Bridges the Knowledge-Action Boundary

(2013) CARLY N. COOK et al.   CONSERVATION BIOLOGY

Biological invasions: What's worth fighting and what can be won?

(2013) Daniel Simberloff   ECOLOGICAL ENGINEERING

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Evaluating the Accuracy of Morphological Identification of Larval Fishes by Applying DNA Barcoding

(2013) Hui-Ling Ko et al.   PLoS One

Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests

(2013) Xavier Pochon et al.   PLoS One

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

(2013) Penelope K. Lindeque et al.   PLoS One

Rapid Invasive Species Detection by Combining Environmental DNA with Light Transmission Spectroscopy

(2013) Scott P. Egan et al.   Conservation Letters

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

Cryptic introduction of the red alga Polysiphonia morrowii Harvey (Rhodomelaceae, Rhodophyta) in the North Atlantic Ocean highlighted by a DNA barcoding approach

(2012) Alexandre Geoffroy et al.   AQUATIC BOTANY

The Southern Hemisphere ascidian Asterocarpa humilis is unrecognised but widely established in NW France and Great Britain

(2012) John D. D. Bishop et al.   BIOLOGICAL INVASIONS

Biological invasions in soil: DNA barcoding as a monitoring tool in a multiple taxa survey targeting European earthworms and springtails in North America

(2012) David Porco et al.   BIOLOGICAL INVASIONS

Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA

(2012) Rupert A. Collins et al.   BIOLOGICAL INVASIONS

Taxonomic identification errors generate misleading ecological niche model predictions of an invasive hawkweed

(2012) David J. Ensing et al.   Botany

DNA barcoding as a new tool for food traceability

(2012) Andrea Galimberti et al.   FOOD RESEARCH INTERNATIONAL

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

DNA-based species detection capabilities using laser transmission spectroscopy

(2012) A. R. Mahon et al.   Journal of the Royal Society Interface

The future of environmental DNA in ecology

(2012) NIGEL G. YOCCOZ   MOLECULAR ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Bioinformatic challenges for DNA metabarcoding of plants and animals

(2012) ERIC COISSAC et al.   MOLECULAR ECOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

(2012) LAURA S. EPP et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Efficient distinction of invasive aquatic plant species from non-invasive related species using DNA barcoding

(2012) R. Ghahramanzadeh et al.   Molecular Ecology Resources

Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

Barcoding and Border Biosecurity: Identifying Cyprinid Fishes in the Aquarium Trade

(2012) Rupert A. Collins et al.   PLoS One

Integrated Operational Taxonomic Units (IOTUs) in Echolocating Bats: A Bridge between Molecular and Traditional Taxonomy

(2012) Andrea Galimberti et al.   PLoS One

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Impacts of biological invasions: what's what and the way forward

(2012) Daniel Simberloff et al.   TRENDS IN ECOLOGY & EVOLUTION

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Ecology of cryptic invasions: latitudinal segregation among Watersipora (Bryozoa) species

(2012) Joshua A. Mackie et al.   Scientific Reports

The occurrence of a widespread marine invader, Didemnum perlucidum (Tunicata, Ascidiacea) in Western Australia

(2011) Dan A. Smale et al.   BIOLOGICAL INVASIONS

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Tracking origins of invasive herbivores through herbaria and archival DNA: the case of the horse-chestnut leaf miner

(2011) David C Lees et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

(2011) Bernard W. Sweeney et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Invertebrates and their dormant eggs transported in ballast sediments of ships arriving to the Canadian coasts and the Laurentian Great Lakes

(2011) Elizabeta Briski et al.   LIMNOLOGY AND OCEANOGRAPHY

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Persistence of Environmental DNA in Freshwater Ecosystems

(2011) Tony Dejean et al.   PLoS One

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

A Molecular Identification Approach for Five Species of Mealybug (Hemiptera: Pseudococcidae) on Citrus Fruit Exported from South Africa

(2010) W. Pieterse et al.   AFRICAN ENTOMOLOGY

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

Bark beetles (Coleoptera: Curculionidae: Scolytinae) of importance to the Australian macadamia industry: an integrative taxonomic approach to species diagnostics

(2010) Andrew Mitchell et al.   AUSTRALIAN JOURNAL OF ENTOMOLOGY

Common goals: policy implications of DNA barcoding as a protocol for identification of arthropod pests

(2010) Robin Floyd et al.   BIOLOGICAL INVASIONS

Use of DNA barcoding to detect invertebrate invasive species from diapausing eggs

(2010) Elizabeta Briski et al.   BIOLOGICAL INVASIONS

Aedes aegypti and Aedes albopictus in Bermuda: extinction, invasion, invasion and extinction

(2010) Laran Kaplan et al.   BIOLOGICAL INVASIONS

Toward routine, DNA-based detection methods for marine pests

(2010) Nathan J. Bott et al.   BIOTECHNOLOGY ADVANCES

DNA barcoding: a six-question tour to improve users' awareness about the method

(2010) M. Casiraghi et al.   BRIEFINGS IN BIOINFORMATICS

Genetic and historical evidence disagree on likely sources of the Atlantic amethyst gem clam Gemma gemma (Totten, 1834) in California

(2010) Phillip M. Hoos et al.   DIVERSITY AND DISTRIBUTIONS

Barcoding marine nematodes: an improved set of nematode 18S rRNA primers to overcome eukaryotic co-interference

(2010) Punyasloke Bhadury et al.   HYDROBIOLOGIA

Reconstructing routes of invasion using genetic data: why, how and so what?

(2010) ARNAUD ESTOUP et al.   MOLECULAR ECOLOGY

Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata

(2010) T. B. HOAREAU et al.   Molecular Ecology Resources

Universal Plant DNA Barcode Loci May Not Work in Complex Groups: A Case Study with Indian Berberis Species

(2010) Sribash Roy et al.   PLoS One

Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity

(2009) Birgit C. Schlick-Steiner et al.   Annual Review of Entomology

In the dark in a large urban park: DNA barcodes illuminate cryptic and introduced moth species

(2009) Jeremy R. deWaard et al.   BIODIVERSITY AND CONSERVATION

Molecular Identification of the Economically Important Invasive Citrus Root WeevilDiaprepes abbreviatus(Coleoptera: Curculionidae)

(2009) Marina S. Ascunce et al.   FLORIDA ENTOMOLOGIST

Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda)

(2009) Emanuele Ferri et al.   Frontiers in Zoology

“COI-like” Sequences Are Becoming Problematic in Molecular Systematic and DNA Barcoding Studies

(2009) Jennifer E. Buhay   JOURNAL OF CRUSTACEAN BIOLOGY

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

The ectomycorrhizal fungusAmanita phalloideswas introduced and is expanding its range on the west coast of North America

(2009) ANNE PRINGLE et al.   MOLECULAR ECOLOGY

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

DNA barcoding of marine crustaceans from the Estuary and Gulf of St Lawrence: a regional-scale approach

(2009) ADRIANA E. RADULOVICI et al.   Molecular Ecology Resources

Routine DNA barcoding of Canadian Gracilariales (Rhodophyta) reveals the invasive speciesGracilaria vermiculophyllain British Columbia

(2009) GARY W. SAUNDERS   Molecular Ecology Resources

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Error Cascades in the Biological Sciences: The Unwanted Consequences of Using Bad Taxonomy in Ecology

(2008) Alejandro Bortolus   AMBIO

Molecular systematics and population genetics of biological invasions: towards a better understanding of invasive species management

(2008) J. Le Roux et al.   ANNALS OF APPLIED BIOLOGY

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

Soils of a Mediterranean hot spot of biodiversity and endemism (Sardinia, Tyrrhenian Islands) are inhabited by pan-European, invasive species ofHypocrea/Trichoderma

(2008) Quirico Migheli et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound

(2008) Julio B.J. Harvey et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding

(2008) Danwei Huang et al.   JOURNAL OF MOLECULAR EVOLUTION

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

DNA barcoding and the documentation of alien species establishment on sub-Antarctic Marion Island

(2008) Steven L. Chown et al.   POLAR BIOLOGY

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION

DNA BARCODING: Barcoding corals: limited by interspecific divergence, not intraspecific variation

(2007) T. L. SHEARER et al.   Molecular Ecology Resources