Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-07-26
DOI
10.3389/fmicb.2019.01713
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
- (2019) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Control of Specialized Metabolism by Signaling and Transcriptional Regulation: Opportunities for New Platforms for Drug Discovery?
- (2018) M. Daniel-Ivad et al. Annual Review of Microbiology
- Cracking the regulatory code of biosynthetic gene clusters as a strategy for natural product discovery
- (2018) Sébastien Rigali et al. BIOCHEMICAL PHARMACOLOGY
- Diverse and Abundant Secondary Metabolism Biosynthetic Gene Clusters in the Genomes of Marine Sponge Derived Streptomyces spp. Isolates
- (2018) Stephen Jackson et al. Marine Drugs
- Identification and Characterization of Mycemycin Biosynthetic Gene Clusters in Streptomyces olivaceus FXJ8.012 and Streptomyces sp. FXJ1.235
- (2018) Fangying Song et al. Marine Drugs
- Fluostatins M–Q Featuring a 6-5-6-6 Ring Skeleton and High Oxidized A-Rings from Marine Streptomyces sp. PKU-MA00045
- (2018) Jing Jin et al. Marine Drugs
- Marine sponge microbial association: Towards disclosing unique symbiotic interactions
- (2018) G. Seghal Kiran et al. MARINE ENVIRONMENTAL RESEARCH
- Rational engineering of Streptomyces albus J1074 for the overexpression of secondary metabolite gene clusters
- (2018) Dimitris Kallifidas et al. Microbial Cell Factories
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
- (2018) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome mining of Streptomyces scabrisporus NF3 reveals symbiotic features including genes related to plant interactions
- (2018) Corina Diana Ceapă et al. PLoS One
- Evolutionary stability of antibiotic protection in a defensive symbiosis
- (2018) Tobias Engl et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome plasticity is governed by double strand break DNA repair in Streptomyces
- (2018) Grégory Hoff et al. Scientific Reports
- Editorial: The Search for Biological Active Agent(s) From Actinobacteria
- (2018) Learn-Han Lee et al. Frontiers in Microbiology
- Specificity and Application of the Lantibiotic Protease NisP
- (2018) Manuel Montalbán-López et al. Frontiers in Microbiology
- Comparative Genomics Provides Insights Into the Marine Adaptation in Sponge-Derived Kocuriaflava S43
- (2018) Wei Sun et al. Frontiers in Microbiology
- Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level
- (2018) Michael Schmid et al. Frontiers in Microbiology
- Genome Mining of the Marine Actinomycete Streptomyces sp. DUT11 and Discovery of Tunicamycins as Anti-complement Agents
- (2018) Xiao-Na Xu et al. Frontiers in Microbiology
- Antibiotic Resistance Mediated by the MacB ABC Transporter Family: A Structural and Functional Perspective
- (2018) Nicholas P. Greene et al. Frontiers in Microbiology
- Butenolides from Streptomyces albus J1074 Act as External Signals To Stimulate Avermectin Production in Streptomyces avermitilis
- (2018) Thao Bich Nguyen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- OpuF, a New Bacillus Compatible Solute ABC Transporter with a Substrate-Binding Protein Fused to the Transmembrane Domain
- (2018) Laura Teichmann et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- InterPro in 2019: improving coverage, classification and access to protein sequence annotations
- (2018) Alex L Mitchell et al. NUCLEIC ACIDS RESEARCH
- Genome Mining for Mycemycin: Discovery and Elucidation of Related Methylation and Chlorination Biosynthetic Chemistries
- (2018) Chunyan Zhang et al. ORGANIC LETTERS
- Cloning and Expression of the Chitinase Encoded by ChiKJ406136 from Streptomyces Sampsonii (Millard & Burr) Waksman KJ40 and Its Antifungal Effect
- (2018) Shujiang Li et al. Forests
- Emerging biopharmaceuticals from marine actinobacteria
- (2017) Syed Shams ul Hassan et al. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
- (2017) Beate M Slaby et al. ISME Journal
- Characterization of bafilomycin biosynthesis in Kitasatospora setae KM-6054 and comparative analysis of gene clusters in Actinomycetales microorganisms
- (2017) Ayako Nara et al. JOURNAL OF ANTIBIOTICS
- Beta-lactamase database (BLDB) – structure and function
- (2017) Thierry Naas et al. JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
- Tryptorubin A: A Polycyclic Peptide from a Fungus-Derived Streptomycete
- (2017) Thomas P. Wyche et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Isolation of Petrocidin A, a New Cytotoxic Cyclic Dipeptide from the Marine Sponge-Derived Bacterium Streptomyces sp. SBT348
- (2017) Cheng Cheng et al. Marine Drugs
- Novel Bioactive Paulomycin Derivatives Produced by Streptomyces albus J1074
- (2017) Jorge Fernández-De la Hoz et al. MOLECULES
- Symbiosis-inspired approaches to antibiotic discovery
- (2017) Navid Adnani et al. NATURAL PRODUCT REPORTS
- GenBank
- (2017) Dennis A Benson et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
- (2017) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Volatiles from the fungal microbiome of the marine sponge Callyspongia cf. flammea
- (2017) Lena Barra et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Secondary Metabolites Produced during the Germination of Streptomyces coelicolor
- (2017) Matouš Čihák et al. Frontiers in Microbiology
- Focused Review: Cytotoxic and Antioxidant Potentials of Mangrove-Derived Streptomyces
- (2017) Hooi-Leng Ser et al. Frontiers in Microbiology
- Deep Sea Actinomycetes and Their Secondary Metabolites
- (2017) Manita Kamjam et al. Frontiers in Microbiology
- Caboxamycin biosynthesis pathway and identification of novel benzoxazoles produced by cross-talk in Streptomyces sp. NTK 937
- (2017) Armando A. Losada et al. Microbial Biotechnology
- New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp. MP131-18
- (2017) Constanze Paulus et al. Scientific Reports
- Multiple Streptomyces species with distinct secondary metabolomes have identical 16S rRNA gene sequences
- (2017) Sanjay Antony-Babu et al. Scientific Reports
- The role of sponge-bacteria interactions: the sponge Aplysilla rosea challenged by its associated bacterium Streptomyces ACT-52A in a controlled aquarium system
- (2016) Mohammad F. Mehbub et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Biosynthetic Gene Cluster for Surugamide A Encompasses an Unrelated Decapeptide, Surugamide F
- (2016) Akihiro Ninomiya et al. CHEMBIOCHEM
- Do we need new antibiotics?
- (2016) J.-M. Rolain et al. CLINICAL MICROBIOLOGY AND INFECTION
- Cell wall distracting anti-Methicillin-resistant Staphylococcus aureus compound PVI331 from a marine sponge associated Streptomyces
- (2016) Appadurai Muthamil Iniyan et al. Journal of Applied Biomedicine
- Bioprospecting Sponge-Associated Microbes for Antimicrobial Compounds
- (2016) Anak Indraningrat et al. Marine Drugs
- Evolution and function of eukaryotic-like proteins from sponge symbionts
- (2016) David Reynolds et al. MOLECULAR ECOLOGY
- The evolution of genome mining in microbes – a review
- (2016) Nadine Ziemert et al. NATURAL PRODUCT REPORTS
- NCBI prokaryotic genome annotation pipeline
- (2016) Tatiana Tatusova et al. NUCLEIC ACIDS RESEARCH
- An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes
- (2016) Hannes Horn et al. Frontiers in Microbiology
- Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios
- (2016) Samantha M. Gromek et al. Frontiers in Microbiology
- Characterization of a New S8 serine Protease from Marine Sedimentary Photobacterium sp. A5–7 and the Function of Its Protease-Associated Domain
- (2016) Hui-Juan Li et al. Frontiers in Microbiology
- Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level
- (2016) Xinpeng Tian et al. Frontiers in Microbiology
- The Crystal Structure of the YknZ Extracellular Domain of ABC Transporter YknWXYZ from Bacillus amyloliquefaciens
- (2016) Yongbin Xu et al. PLoS One
- Characterization of the mechanism of prolonged adaptation to osmotic stress of Jeotgalibacillus malaysiensis via genome and transcriptome sequencing analyses
- (2016) Amira Suriaty Yaakop et al. Scientific Reports
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- The Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2
- (2015) Juan Pablo Gomez-Escribano et al. BMC GENOMICS
- Inhibitory activities of the marine streptomycete-derived compound SF2446A2 against Chlamydia trachomatis and Schistosoma mansoni
- (2015) Anastasija Reimer et al. JOURNAL OF ANTIBIOTICS
- Stability of the Osmoregulated Promoter-DerivedproPmRNA Is Posttranscriptionally Regulated by RNase III in Escherichia coli
- (2015) Boram Lim et al. JOURNAL OF BACTERIOLOGY
- Bacterial responses to osmotic challenges
- (2015) Janet M. Wood JOURNAL OF GENERAL PHYSIOLOGY
- Mycemycins A–E, New Dibenzoxazepinones Isolated from Two Different Streptomycetes
- (2015) Ning Liu et al. Marine Drugs
- Isolation and characterization of multifunctional Streptomyces species with antimicrobial, nematicidal and phytohormone activities from marine environments in Egypt
- (2015) Ferial M. Rashad et al. MICROBIOLOGICAL RESEARCH
- Minimum Information about a Biosynthetic Gene cluster
- (2015) Marnix H Medema et al. Nature Chemical Biology
- Discovery of microbial natural products by activation of silent biosynthetic gene clusters
- (2015) Peter J. Rutledge et al. NATURE REVIEWS MICROBIOLOGY
- Diversity of cultivable protease-producing bacteria in sediments of Jiaozhou Bay, China
- (2015) Xi-Ying Zhang et al. Frontiers in Microbiology
- The Split-Apply-Combine Strategy for Data Analysis
- (2015) Hadley Wickham Journal of Statistical Software
- Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective
- (2014) Andrey Feklístov et al. Annual Review of Microbiology
- Diversity and biotechnological potential of microorganisms associated with marine sponges
- (2014) John A. Fuerst APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Marine actinobacteria: An important source of bioactive natural products
- (2014) Panchanathan Manivasagan et al. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY
- Antimicrobial resistance: impact on clinical and economic outcomes and the need for new antimicrobials
- (2014) Abrar K Thabit et al. EXPERT OPINION ON PHARMACOTHERAPY
- Defensive symbiosis: a microbial perspective
- (2014) Keith Clay FUNCTIONAL ECOLOGY
- Antibiotic activity and microbial community of the temperate sponge,Haliclonasp.
- (2014) A. Hoppers et al. JOURNAL OF APPLIED MICROBIOLOGY
- Structural diversity of ABC transporters
- (2014) Josy ter Beek et al. JOURNAL OF GENERAL PHYSIOLOGY
- Diversity, abundance and natural products of marine sponge-associated actinomycetes
- (2014) Usama Ramadan Abdelmohsen et al. NATURAL PRODUCT REPORTS
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential
- (2014) Elena Ian et al. PLoS One
- Host Control of Symbiont Natural Product Chemistry in Cryptic Populations of the Tunicate Lissoclinum patella
- (2014) Jason C. Kwan et al. PLoS One
- Terpene synthases are widely distributed in bacteria
- (2014) Yuuki Yamada et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effect of Copper Treatment on the Composition and Function of the Bacterial Community in the Sponge Haliclona cymaeformis
- (2014) Ren-Mao Tian et al. mBio
- Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics
- (2014) Zhi-Yong Li et al. Scientific Reports
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites
- (2013) Kyu-Sang Hwang et al. BIOTECHNOLOGY ADVANCES
- Characterization of the Bafilomycin Biosynthetic Gene Cluster fromStreptomyces lohii
- (2013) Wei Zhang et al. CHEMBIOCHEM
- The genusPseudovibriocontains metabolically versatile bacteria adapted for symbiosis
- (2013) Vladimir Bondarev et al. ENVIRONMENTAL MICROBIOLOGY
- Commercial proteases: Present and future
- (2013) Qing Li et al. FEBS LETTERS
- Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress
- (2013) Lu Fan et al. ISME Journal
- Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from CellulolyticStreptomycessp. SirexAA-E
- (2013) Christopher M. Bianchetti et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Two-component systems in Streptomyces: key regulators of antibiotic complex pathways
- (2013) Héctor Rodríguez et al. Microbial Cell Factories
- The TetR Family of Regulators
- (2013) L. Cuthbertson et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes
- (2013) Seung Chul Shin et al. PLoS One
- Marine Sediment-Derived Streptomyces Bacteria from British Columbia, Canada Are a Promising Microbiota Resource for the Discovery of Antimicrobial Natural Products
- (2013) Doralyn S. Dalisay et al. PLoS One
- Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs
- (2013) Jasper M. de Goeij et al. SCIENCE
- Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov.
- (2013) Xiaoying Rong et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster
- (2013) Yunzi Luo et al. Nature Communications
- Osmoadaptation and plant growth promotion by salt tolerant bacteria under salt stress
- (2012) Aisha Waheed Qurashi African Journal of Microbiology Research
- Assessing the Contributions of the LiaS Histidine Kinase to the Innate Resistance of Listeria monocytogenes to Nisin, Cephalosporins, and Disinfectants
- (2012) Barry Collins et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genome plasticity and systems evolution in Streptomyces
- (2012) Zhan Zhou et al. BMC BIOINFORMATICS
- Genomic and transcriptomic insights into the thermo-regulated biosynthesis of validamycin in Streptomyces hygroscopicus 5008
- (2012) Hang Wu et al. BMC GENOMICS
- Comparative genomics reveals evidence of marine adaptation in Salinispora species
- (2012) Kevin Penn et al. BMC GENOMICS
- Characterization of replication and conjugation of plasmid pWTY27 from a widely distributed Streptomyces species
- (2012) Tao Wang et al. BMC MICROBIOLOGY
- Copper-responsive gene regulation in bacteria
- (2012) C. Rademacher et al. MICROBIOLOGY-SGM
- Crystal Structures of Two Transcriptional Regulators from Bacillus cereus Define the Conserved Structural Features of a PadR Subfamily
- (2012) Guntur Fibriansah et al. PLoS One
- Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
- (2012) L. Fan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Evolution of genome base composition and genome size in bacteria
- (2012) Hiromi Nishida Frontiers in Microbiology
- Characterization of the multiple CRISPR loci on Streptomyces linear plasmid pSHK1
- (2011) Peng Guo et al. ACTA BIOCHIMICA ET BIOPHYSICA SINICA
- BamTools: a C++ API and toolkit for analyzing and managing BAM files
- (2011) D. W. Barnett et al. BIOINFORMATICS
- Antibiotics as Signal Molecules
- (2011) Diego Romero et al. CHEMICAL REVIEWS
- Diversity and antimicrobial activities of microbes from two Irish marine sponges, Suberites carnosus and Leucosolenia sp.
- (2011) B. Flemer et al. JOURNAL OF APPLIED MICROBIOLOGY
- A Single Streptomyces Symbiont Makes Multiple Antifungals to Support the Fungus Farming Ant Acromyrmex octospinosus
- (2011) Ryan F. Seipke et al. PLoS One
- Disruption of the siderophore-binding desE receptor gene in Streptomyces coelicolor A3(2) results in impaired growth in spite of multiple iron-siderophore transport systems
- (2011) Víctor H. Tierrafría et al. Microbial Biotechnology
- A guide to successful bioprospecting: informed by actinobacterial systematics
- (2010) Michael Goodfellow et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Bacterial stimulus perception and signal transduction: Response to osmotic stress
- (2010) Reinhard Krämer CHEMICAL RECORD
- Toxin–antitoxin systems: why so many, what for?
- (2010) Laurence Van Melderen CURRENT OPINION IN MICROBIOLOGY
- Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
- (2010) Torsten Thomas et al. ISME Journal
- A new angucycline and a new butenolide isolated from lichen-derived Streptomyces spp.
- (2010) Keiichiro Motohashi et al. JOURNAL OF ANTIBIOTICS
- Daptomycin, a Bacterial Lipopeptide Synthesized by a Nonribosomal Machinery
- (2010) Lars Robbel et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mayamycin, a Cytotoxic Polyketide from aStreptomycesStrain Isolated from the Marine SpongeHalichondria panicea
- (2010) Imke Schneemann et al. JOURNAL OF NATURAL PRODUCTS
- Production of Lantipeptides inEscherichia coli
- (2010) Yanxiang Shi et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Chemistry and biology of siderophores
- (2010) Robert C. Hider et al. NATURAL PRODUCT REPORTS
- CDD: a Conserved Domain Database for the functional annotation of proteins
- (2010) A. Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Caboxamycin, a new antibiotic of the benzoxazole family produced by the deep-sea strain Streptomyces sp. NTK 937
- (2009) Claudia Hohmann et al. JOURNAL OF ANTIBIOTICS
- DNAPlotter: circular and linear interactive genome visualization
- (2008) T. Carver et al. BIOINFORMATICS
- StreptomycesTelomeres Contain a Promoter
- (2008) Yuh-ru Lin et al. JOURNAL OF BACTERIOLOGY
- Intracellular Organic Osmolytes: Function and Regulation
- (2008) Maurice B. Burg et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Phylogenetic Diversity and Antimicrobial Activities of Fungi Associated with Haliclona simulans Isolated from Irish Coastal Waters
- (2008) Paul W. Baker et al. MARINE BIOTECHNOLOGY
- Isolation and Analysis of Bacteria with Antimicrobial Activities from the Marine Sponge Haliclona simulans Collected from Irish Waters
- (2008) Jonathan Kennedy et al. MARINE BIOTECHNOLOGY
- Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
- (2008) S. E. Maddocks et al. MICROBIOLOGY-SGM
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More