An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes
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Title
An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 7, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2016-11-08
DOI
10.3389/fmicb.2016.01751
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- The phage growth limitation system in Streptomyces coelicolor A(3)2 is a toxin/antitoxin system, comprising enzymes with DNA methyltransferase, protein kinase and ATPase activity
- (2015) Paul A. Hoskisson et al. VIROLOGY
- Lifestyle Evolution in Cyanobacterial Symbionts of Sponges
- (2015) Ilia Burgsdorf et al. mBio
- Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
- (2015) Stephen Nayfach et al. GENOME BIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs
- (2014) Anna A Gogleva et al. BMC GENOMICS
- Revealing microbial functional activities in the Red Sea spongeStylissa carteriby metatranscriptomics
- (2014) Lucas Moitinho-Silva et al. ENVIRONMENTAL MICROBIOLOGY
- Implications of streamlining theory for microbial ecology
- (2014) Stephen J Giovannoni et al. ISME Journal
- An environmental bacterial taxon with a large and distinct metabolic repertoire
- (2014) Micheal C. Wilson et al. NATURE
- REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
- (2014) Richard J. Roberts et al. NUCLEIC ACIDS RESEARCH
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts
- (2014) Pedro H. Oliveira et al. NUCLEIC ACIDS RESEARCH
- The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
- (2014) Janine Kamke et al. PLoS One
- Symbiotic Adaptation Drives Genome Streamlining of the Cyanobacterial Sponge Symbiont "Candidatus Synechococcus spongiarum"
- (2014) Z.-M. Gao et al. mBio
- Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense
- (2013) K. Vasu et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
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- (2013) Sita J. Lange et al. NUCLEIC ACIDS RESEARCH
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- (2013) Ambarish Biswas et al. RNA Biology
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Genomic insights into the marine sponge microbiome
- (2012) Ute Hentschel et al. NATURE REVIEWS MICROBIOLOGY
- Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
- (2012) L. Fan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interactive metagenomic visualization in a Web browser
- (2011) Brian D Ondov et al. BMC BIOINFORMATICS
- Integrative analysis of environmental sequences using MEGAN4
- (2011) D. H. Huson et al. GENOME RESEARCH
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- Evolutionary Dynamics of Clustered Irregularly Interspaced Short Palindromic Repeat Systems in the Ocean Metagenome
- (2010) V. A. Sorokin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
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