TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
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Title
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-05-16
DOI
10.1038/s41467-019-10210-3
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- (2018) Marco A. Riojas et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
- (2018) Jongsik Chun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2018) Sebastien Gagneux NATURE REVIEWS MICROBIOLOGY
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- (2018) Imen Nouioui et al. Frontiers in Microbiology
- Frondibacter mangrovi sp. nov., a member of the family Flavobacteriaceae isolated from seawater by in situ cultivation, and emended description of Frondibacter aureus
- (2017) Jaewoo Yoon et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
- (2017) Meinhard Simon et al. ISME Journal
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
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- (2017) Supratim Mukherjee et al. NATURE BIOTECHNOLOGY
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- (2017) Alexander Gill Frontiers in Microbiology
- Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
- (2017) Maria del Carmen Montero-Calasanz et al. Frontiers in Microbiology
- Tuberculosis
- (2016) Keertan Dheda et al. LANCET
- Phylogenetics of familyEnterobacteriaceaeand proposal to reclassifyEscherichia hermanniiandSalmonella subterraneaasAtlantibacter hermanniiandAtlantibacter subterraneagen. nov., comb. nov.
- (2016) Hiroyuki Hata et al. MICROBIOLOGY AND IMMUNOLOGY
- Comparative genomics of biotechnologically important yeasts
- (2016) Robert Riley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae
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- (2016) Richard L. Hahnke et al. Frontiers in Microbiology
- The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
- (2016) Ilias Lagkouvardos et al. Nature Microbiology
- Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex
- (2016) Daniel Garrido-Sanz et al. PLoS One
- JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
- (2015) Michael Richter et al. BIOINFORMATICS
- Insights from 20 years of bacterial genome sequencing
- (2015) Miriam Land et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- International Code of Nomenclature of Prokaryotes
- (2015) Charles T Parker et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
- (2015) Vincent Lefort et al. MOLECULAR BIOLOGY AND EVOLUTION
- BacDive – The Bacterial Diversity Metadatabase in 2016
- (2015) Carola Söhngen et al. NUCLEIC ACIDS RESEARCH
- Microbial species delineation using whole genome sequences
- (2015) Neha J. Varghese et al. NUCLEIC ACIDS RESEARCH
- Genomic insights into the taxonomic status of the Bacillus cereus group
- (2015) Yang Liu et al. Scientific Reports
- Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
- (2015) Jan P Meier-Kolthoff et al. Standards in Genomic Sciences
- Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
- (2014) J. Chun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age
- (2014) Jan P. Meier-Kolthoff et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Type material in the NCBI Taxonomy Database
- (2014) Scott Federhen NUCLEIC ACIDS RESEARCH
- When should a DDH experiment be mandatory in microbial taxonomy?
- (2013) Jan P. Meier-Kolthoff et al. ARCHIVES OF MICROBIOLOGY
- Genome sequence-based species delimitation with confidence intervals and improved distance functions
- (2013) Jan P Meier-Kolthoff et al. BMC BIOINFORMATICS
- Highly parallelized inference of large genome-based phylogenies
- (2013) Jan P. Meier-Kolthoff et al. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE
- Alignment-Free Genome Tree Inference by Learning Group-Specific Distance Metrics
- (2013) Kaustubh R. Patil et al. Genome Biology and Evolution
- Growing Unculturable Bacteria
- (2012) E. J. Stewart JOURNAL OF BACTERIOLOGY
- Cultivation of unculturable soil bacteria
- (2012) Van H.T. Pham et al. TRENDS IN BIOTECHNOLOGY
- On the fitness of microbial taxonomy
- (2012) Javier Tamames et al. TRENDS IN MICROBIOLOGY
- Recombination and Population Structure in Salmonella enterica
- (2011) Xavier Didelot et al. PLoS Genetics
- The Global Burden of NontyphoidalSalmonellaGastroenteritis
- (2010) Shannon E. Majowicz et al. CLINICAL INFECTIOUS DISEASES
- A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA
- (2010) Markus Göker et al. Evolutionary Bioinformatics
- En route to a genome-based classification of Archaea and Bacteria?
- (2010) H.-P. Klenk et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
- (2010) Alexander F. Auch et al. Standards in Genomic Sciences
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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