Comparative genomics of biotechnologically important yeasts

A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes

(2016) Stefanie Mühlhausen et al.   GENOME RESEARCH

Activating and Elucidating Metabolism of Complex Sugars in Yarrowia lipolytica

(2015) Seunghyun Ryu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomics and the making of yeast biodiversity

(2015) Chris Todd Hittinger et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Temperature and host preferences drive the diversification of Saccharomyces and other yeasts: a survey and the discovery of eight new yeast species

(2015) Kayla Sylvester et al.   FEMS YEAST RESEARCH

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae

(2015) Carmen Scheuner et al.   Standards in Genomic Sciences

Molecular Phylogeny of Sequenced Saccharomycetes Reveals Polyphyly of the Alternative Yeast Codon Usage

(2014) Stefanie Mühlhausen et al.   Genome Biology and Evolution

Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locusSaccharomyces cerevisiaesystem

(2014) Sara J. Hanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

(2014) László G. Nagy et al.   Nature Communications

Inversion of the Chromosomal Region between Two Mating Type Loci Switches the Mating Type in Hansenula polymorpha

(2014) Hiromi Maekawa et al.   PLoS Genetics

The Evolution of Fungal Metabolic Pathways

(2014) Jennifer H. Wisecaver et al.   PLoS Genetics

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Relationships among genera of theSaccharomycotina(Ascomycota) from multigene phylogenetic analysis of type species

(2012) Cletus P. Kurtzman et al.   FEMS YEAST RESEARCH

Multilocus Phylogenetic Study of the Scheffersomyces Yeast Clade and Characterization of the N-Terminal Region of Xylose Reductase Gene

(2012) Hector Urbina et al.   PLoS One

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Lipid production from Yarrowia lipolytica Po1g grown in sugarcane bagasse hydrolysate

(2011) Yeshitila Asteraye Tsigie et al.   BIORESOURCE TECHNOLOGY

The genetic code of the fungal CTG clade

(2011) Manuel A.S. Santos et al.   COMPTES RENDUS BIOLOGIES

Reinventing Heterochromatin in Budding Yeasts: Sir2 and the Origin Recognition Complex Take Center Stage

(2011) Meleah A. Hickman et al.   EUKARYOTIC CELL

Characterisation of the gene cluster for l-rhamnose catabolism in the yeast Scheffersomyces (Pichia) stipitis

(2011) Outi M. Koivistoinen et al.   GENE

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Codivergence of Mycoviruses with Their Hosts

(2011) Markus Göker et al.   PLoS One

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

(2011) Dana J. Wohlbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New insights into galactose metabolism by Schizosaccharomyces pombe: Isolation and characterization of a galactose-assimilating mutant

(2010) Tomohiko Matsuzawa et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Yeast evolutionary genomics

(2010) Bernard Dujon   NATURE REVIEWS GENETICS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Metabolism among Members of theMethanosarcinaceaeInhabiting Freshwater and Saline Environments

(2010) Stefan Spring et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Fast and Consistent Estimation of Species Trees Using Supermatrix Rooted Triples

(2009) Michael DeGiorgio et al.   MOLECULAR BIOLOGY AND EVOLUTION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH