Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

Chemotactic Motility of Pseudomonas fluorescens F113 under Aerobic and Denitrification Conditions

(2015) Candela Muriel et al.   PLoS One

Phylogenomics and systematics in Pseudomonas

(2015) Margarita Gomila et al.   Frontiers in Microbiology

Pyrrolnitrin and Hydrogen Cyanide Production by Pseudomonas chlororaphis Strain PA23 Exhibits Nematicidal and Repellent Activity against Caenorhabditis elegans

(2015) Munmun Nandi et al.   PLoS One

Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

(2015) Jan P Meier-Kolthoff et al.   Standards in Genomic Sciences

Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts

(2014) Pieter De Maayer et al.   BMC GENOMICS

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

(2014) J. Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age

(2014) Jan P. Meier-Kolthoff et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Soil mesocosm studies on atrazine bioremediation

(2014) Sneha Sagarkar et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria

(2014) Ying Zhang et al.   Frontiers in Microbiology

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

(2013) Miguel Redondo-Nieto et al.   BMC GENOMICS

Highly parallelized inference of large genome-based phylogenies

(2013) Jan P. Meier-Kolthoff et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE

Use of Pseudomonas spp. for the bioremediation of environmental pollutants: a review

(2013) Samina Wasi et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Alignment-Free Genome Tree Inference by Learning Group-Specific Distance Metrics

(2013) Kaustubh R. Patil et al.   Genome Biology and Evolution

Pseudomonas yangmingensis sp. nov., an alkaliphilic denitrifying species isolated from a hot spring

(2013) Biing-Teo Wong et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Cloning of three 2,3-dihydroxybiphenyl-1,2-dioxygenase genes from Achromobacter sp. BP3 and the analysis of their roles in the biodegradation of biphenyl

(2013) Li Cao et al.   JOURNAL OF HAZARDOUS MATERIALS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

ThedarGenes ofPseudomonas chlororaphisPCL1606 Are Crucial for Biocontrol Activity via Production of the Antifungal Compound 2-Hexyl, 5-Propyl Resorcinol

(2013) Claudia E. Calderón et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Co-phylog: an assembly-free phylogenomic approach for closely related organisms

(2013) Huiguang Yi et al.   NUCLEIC ACIDS RESEARCH

LPSN—list of prokaryotic names with standing in nomenclature

(2013) Aidan C. Parte   NUCLEIC ACIDS RESEARCH

The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4

(2013) Jin Duan et al.   PLoS One

Genomic analysis of the biocontrol strainPseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

(2013) Muriel Marchi et al.   Environmental Microbiology Reports

Promise for plant pest control: root-associated pseudomonads with insecticidal activities

(2013) Peter Kupferschmied et al.   Frontiers in Plant Science

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

(2012) Rolf S Kaas et al.   BMC GENOMICS

Control and host-dependent activation of insect toxin expression in a root-associated biocontrol pseudomonad

(2012) Maria Péchy-Tarr et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of a Highly Efficient Aerobic Denitrifying Bacterium, Pseudomonas stutzeri T13

(2012) A. Li et al.   JOURNAL OF BACTERIOLOGY

Identification of Traits Shared by Rhizosphere-Competent Strains of Fluorescent Pseudomonads

(2012) Sandrine Ghirardi et al.   MICROBIAL ECOLOGY

Concordance between whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry and multilocus sequence analysis approaches in species discrimination within the genus Pseudomonas

(2012) Magdalena Mulet et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

(2011) Da-Qiang Wu et al.   BMC GENOMICS

Characterization of pyoverdine and achromobactin in Pseudomonas syringae pv. phaseolicola 1448a

(2011) Jeremy G Owen et al.   BMC MICROBIOLOGY

Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited

(2011) Peter Kämpfer et al.   ENVIRONMENTAL MICROBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin

(2011) Alban Ramette et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes

(2010) Leland S. Pierson et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Chemistry and biology of siderophores

(2010) Robert C. Hider et al.   NATURAL PRODUCT REPORTS

Why plants need more than one type of auxin

(2010) Sibu Simon et al.   PLANT SCIENCE

Lethality and Developmental Delay in Drosophila melanogaster Larvae after Ingestion of Selected Pseudomonas fluorescens Strains

(2010) Marika H. Olcott et al.   PLoS One

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Gene expression analysis of the biocontrol fungus Trichoderma harzianum in the presence of tomato plants, chitin, or glucose using a high-density oligonucleotide microarray

(2009) Ilanit Samolski et al.   BMC MICROBIOLOGY

Pseudomonas fluorescensCHA0 can kill subterranean termiteOdontotermes obesusby inhibiting cytochromecoxidase of the termite respiratory chain

(2009) Karunanidhi Kanchana Devi et al.   FEMS MICROBIOLOGY LETTERS

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants

(2009) E. P. Ivanova et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt

(2009) Sylvie Mazurier et al.   ISME Journal

Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations

(2009) Qiang Li et al.   JOURNAL OF BIOTECHNOLOGY

Genomics of secondary metabolite production by Pseudomonas spp.

(2009) Harald Gross et al.   NATURAL PRODUCT REPORTS

Molecular Taxonomy of Phytopathogenic Fungi: A Case Study in Peronospora

(2009) Markus Göker et al.   PLoS One

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

(2009) Mark W Silby et al.   GENOME BIOLOGY

Plant immune responses triggered by beneficial microbes

(2008) Saskia CM Van Wees et al.   CURRENT OPINION IN PLANT BIOLOGY

Molecular analysis of a novel gene cluster encoding an insect toxin in plant-associated strains ofPseudomonas fluorescens

(2008) Maria Péchy-Tarr et al.   ENVIRONMENTAL MICROBIOLOGY

HicA of Escherichia coli Defines a Novel Family of Translation-Independent mRNA Interferases in Bacteria and Archaea

(2008) M. G. Jorgensen et al.   JOURNAL OF BACTERIOLOGY

A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera

(2008) M. Deloger et al.   JOURNAL OF BACTERIOLOGY

The rpoB gene as a tool for clinical microbiologists

(2008) Toïdi Adékambi et al.   TRENDS IN MICROBIOLOGY