A communal catalogue reveals Earth’s multiscale microbial diversity
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A communal catalogue reveals Earth’s multiscale microbial diversity
Authors
Keywords
-
Journal
NATURE
Volume -, Issue -, Pages -
Publisher
Springer Nature
Online
2017-10-31
DOI
10.1038/nature24621
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem
- (2017) Sean M. Gibbons et al. mSystems
- pH is the primary determinant of the bacterial community structure in agricultural soils impacted by polycyclic aromatic hydrocarbon pollution
- (2017) Yucheng Wu et al. Scientific Reports
- Spatial Gaps in Global Biodiversity Information and the Role of Citizen Science
- (2016) Tatsuya Amano et al. BIOSCIENCE
- A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies
- (2016) Anjana Grandhi et al. BMC BIOINFORMATICS
- The Mass Production of Redundant, Misleading, and Conflicted Systematic Reviews and Meta-analyses
- (2016) JOHN P.A. IOANNIDIS MILBANK QUARTERLY
- Diet-induced extinctions in the gut microbiota compound over generations
- (2016) Erica D. Sonnenburg et al. NATURE
- Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
- (2016) Daryl M Gohl et al. NATURE BIOTECHNOLOGY
- Simple and efficient fully-functional succinct trees
- (2016) Joshimar Cordova et al. THEORETICAL COMPUTER SCIENCE
- Temperature mediates continental-scale diversity of microbes in forest soils
- (2016) Jizhong Zhou et al. Nature Communications
- The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
- (2016) Pier Luigi Buttigieg et al. Journal of Biomedical Semantics
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals
- (2016) Kate L. Ormerod et al. Microbiome
- Quantifying human impact on Earth's microbiome
- (2016) Stephen B. Pointing et al. Nature Microbiology
- Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Microbiology
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- Low diversity of planktonic bacteria in the tropical ocean
- (2016) Mathias Milici et al. Scientific Reports
- Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
- (2015) A Apprill et al. AQUATIC MICROBIAL ECOLOGY
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- Decreases in average bacterial community rRNA operon copy number during succession
- (2015) Diana R Nemergut et al. ISME Journal
- Determinants of community structure in the global plankton interactome
- (2015) G. Lima-Mendez et al. SCIENCE
- A unified initiative to harness Earth's microbiomes
- (2015) A. P. Alivisatos et al. SCIENCE
- Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
- (2015) William Walters et al. mSystems
- Building Predictive Models inRUsing thecaretPackage
- (2015) Max Kuhn Journal of Statistical Software
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- The Earth Microbiome project: successes and aspirations
- (2014) Jack A Gilbert et al. BMC BIOLOGY
- An ontology for microbial phenotypes
- (2014) Marcus C Chibucos et al. BMC MICROBIOLOGY
- Assemblage Time Series Reveal Biodiversity Change but Not Systematic Loss
- (2014) M. Dornelas et al. SCIENCE
- Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
- (2014) Jai Ram Rideout et al. PeerJ
- The founding charter of the Genomic Observatories Network
- (2014) Neil Davies et al. GigaScience
- A meta-analysis of changes in bacterial and archaeal communities with time
- (2013) Ashley Shade et al. ISME Journal
- Global marine bacterial diversity peaks at high latitudes in winter
- (2013) Joshua Ladau et al. ISME Journal
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- Going back to the roots: the microbial ecology of the rhizosphere
- (2013) Laurent Philippot et al. NATURE REVIEWS MICROBIOLOGY
- Ribosomal Database Project: data and tools for high throughput rRNA analysis
- (2013) James R. Cole et al. NUCLEIC ACIDS RESEARCH
- The environment ontology: contextualising biological and biomedical entities
- (2013) Pier Buttigieg et al. Journal of Biomedical Semantics
- EMPeror: a tool for visualizing high-throughput microbial community data
- (2013) Yoshiki Vázquez-Baeza et al. GigaScience
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Measuring fractions of beta diversity and their relationships to nestedness: a theoretical and empirical comparison of novel approaches
- (2012) José C. Carvalho et al. OIKOS
- The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
- (2012) Laurel Cooper et al. PLANT AND CELL PHYSIOLOGY
- Uberon, an integrative multi-species anatomy ontology
- (2012) Christopher J Mungall et al. GENOME BIOLOGY
- The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
- (2012) Daniel McDonald et al. GigaScience
- Marine bacterial, archaeal and protistan association networks reveal ecological linkages
- (2011) Joshua A Steele et al. ISME Journal
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
- (2011) Daniel McDonald et al. ISME Journal
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
- (2011) Pelin Yilmaz et al. NATURE BIOTECHNOLOGY
- Bayesian community-wide culture-independent microbial source tracking
- (2011) Dan Knights et al. NATURE METHODS
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
- (2011) Patrick D. Schloss et al. PLoS One
- Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project
- (2011) Jack A. Gilbert et al. Standards in Genomic Sciences
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- Cython: The Best of Both Worlds
- (2010) Stefan Behnel et al. COMPUTING IN SCIENCE & ENGINEERING
- Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes
- (2010) Haiyan Chu et al. ENVIRONMENTAL MICROBIOLOGY
- Ironing out the wrinkles in the rare biosphere through improved OTU clustering
- (2010) Susan M. Huse et al. ENVIRONMENTAL MICROBIOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Controlling False Discoveries in Multidimensional Directional Decisions, with Applications to Gene Expression Data on Ordered Categories
- (2009) Wenge Guo et al. BIOMETRICS
- Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
- (2009) Micah Hamady et al. ISME Journal
- Worlds within worlds: evolution of the vertebrate gut microbiota
- (2008) Ruth E. Ley et al. NATURE REVIEWS MICROBIOLOGY
- A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement
- (2008) Mário Almeida-Neto et al. OIKOS
- A consumer's guide to nestedness analysis
- (2008) Werner Ulrich et al. OIKOS
- A latitudinal diversity gradient in planktonic marine bacteria
- (2008) J. A. Fuhrman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now