The Importance of Bacterial Culture to Food Microbiology in the Age of Genomics

A Matter of Time: Small RNAs Regulate the Duration of Epigenetic Inheritance

(2017) Leah Houri-Zeevi et al.   TRENDS IN GENETICS

Co-culture-inducible bacteriocin production in lactic acid bacteria

(2016) Panagiotis Chanos et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

(2016) Matthew D. Whiteside et al.   BMC MICROBIOLOGY

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation

(2016) Brendan R. Jackson et al.   CLINICAL INFECTIOUS DISEASES

Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing

(2016) J. Ronholm et al.   CLINICAL MICROBIOLOGY REVIEWS

Connecting chromosome replication with cell growth in bacteria

(2016) Heath Murray   CURRENT OPINION IN MICROBIOLOGY

The Role of Efflux and Physiological Adaptation in Biofilm Tolerance and Resistance

(2016) Heleen Van Acker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Enumeration of Escherichia coli O157:H7 in Outbreak-Associated Beef Patties

(2016) ALEXANDER GILL et al.   JOURNAL OF FOOD PROTECTION

Genomic Tools for Customized Recovery and Detection of Foodborne Shiga Toxigenic Escherichia coli

(2016) MICHAEL KNOWLES et al.   JOURNAL OF FOOD PROTECTION

Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States

(2016) Rebecca L. Lindsey et al.   Frontiers in Microbiology

Revisiting the STEC Testing Approach: Using espK and espV to Make Enterohemorrhagic Escherichia coli (EHEC) Detection More Reliable in Beef

(2016) Sabine Delannoy et al.   Frontiers in Microbiology

The Rho Termination Factor of Clostridium botulinum Contains a Prion-Like Domain with a Highly Amyloidogenic Core

(2016) Irantzu Pallarès et al.   Frontiers in Microbiology

Infection with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance — Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2012–2015

(2016) Jennifer Y. Huang et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Significance of whole genome sequencing for surveillance, source attribution and microbial risk assessment of foodborne pathogens

(2016) Eelco Franz et al.   Current Opinion in Food Science

Outbreaks Where Food Workers Have Been Implicated in the Spread of Foodborne Disease. Part 4. Infective Doses and Pathogen Carriage

(2016) EWEN C. D. TODD et al.   JOURNAL OF FOOD PROTECTION

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

(2016) Catherine E. Yoshida et al.   PLoS One

Clostridium botulinum Group II Isolate Phylogenomic Profiling Using Whole-Genome Sequence Data

(2015) K. A. Weedmark et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phenotypic Heterogeneity, a Phenomenon That May Explain Why Quorum Sensing Does Not Always Result in Truly Homogenous Cell Behavior

(2015) Jessica Grote et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes

(2015) Jason C. Kwong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

It Is Not All about Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the Environmental Source

(2015) Qinning Wang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Enumeration of Escherichia coli O157 in Outbreak-Associated Gouda Cheese Made with Raw Milk

(2015) ALEXANDER GILL et al.   JOURNAL OF FOOD PROTECTION

Tracing Origins of theSalmonellaBareilly Strain Causing a Food-borne Outbreak in the United States

(2015) Maria Hoffmann et al.   JOURNAL OF INFECTIOUS DISEASES

Pathogens protection against the action of disinfectants in multispecies biofilms

(2015) Pilar Sanchez-Vizuete et al.   Frontiers in Microbiology

Models in biology: ‘accurate descriptions of our pathetic thinking’

(2014) Jeremy Gunawardena   BMC BIOLOGY

Culture-independent diagnostic testing: have we opened Pandora's box for good?

(2014) J. Michael Janda et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Multiple Regulatory Systems Coordinate DNA Replication with Cell Growth in Bacillus subtilis

(2014) Heath Murray et al.   PLoS Genetics

An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study withSalmonella

(2014) James B. Pettengill et al.   PeerJ

Better Tests, Better Care: Improved Diagnostics for Infectious Diseases

(2013) A. M. Caliendo et al.   CLINICAL INFECTIOUS DISEASES

Microbial Source Tracking: A Tool for Identifying Sources of Microbial Contamination in the Food Chain

(2013) Ling-Lin Fu et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Thirty years of viable but nonculturable state research: Unsolved molecular mechanisms

(2013) Daniela Pinto et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Ribosome-targeting antibiotics and mechanisms of bacterial resistance

(2013) Daniel N. Wilson   NATURE REVIEWS MICROBIOLOGY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Chromosome Replication and Segregation in Bacteria

(2012) Rodrigo Reyes-Lamothe et al.   Annual Review of Genetics

The Origin of the Haitian Cholera Outbreak Strain

(2010) Chen-Shan Chin et al.   NEW ENGLAND JOURNAL OF MEDICINE

Mapping the Tree of Life: Progress and Prospects

(2009) N. R. Pace   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A review of microbial injury and recovery methods in food

(2008) V WU   FOOD MICROBIOLOGY

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS