Establishment of a multi-species biofilm model and metatranscriptomic analysis of biofilm and planktonic cell communities
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Title
Establishment of a multi-species biofilm model and metatranscriptomic analysis of biofilm and planktonic cell communities
Authors
Keywords
Biofilm, DNA repair, Iron metabolism, Metatranscriptome, Planktonic cell, RNA-seq, Stress response, Sulfur metabolism
Journal
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
Volume 100, Issue 16, Pages 7263-7279
Publisher
Springer Nature
Online
2016-04-22
DOI
10.1007/s00253-016-7532-6
References
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Note: Only part of the references are listed.- CysK Plays a Role in Biofilm Formation and Colonization by Vibrio fischeri
- (2015) Priyanka Singh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2015) Xiurong Si et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Isolation and characterisation of non-anaerobic butanol-producing symbiotic system TSH06
- (2015) Genyu Wang et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
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- (2015) Vânia Pobre et al. BMC GENOMICS
- Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance
- (2015) Hiromi Kato et al. DNA RESEARCH
- The thiG Gene Is Required for Full Virulence of Xanthomonas oryzae pv. oryzae by Preventing Cell Aggregation
- (2015) Xiaoyue Yu et al. PLoS One
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- (2015) Ethan Kolderman et al. PLoS One
- BolA Is a Transcriptional Switch That Turns Off Motility and Turns On Biofilm Development
- (2015) Clémentine Dressaire et al. mBio
- Chronic lung infection by Pseudomonas aeruginosa biofilm is cured by L-Methionine in combination with antibiotic therapy
- (2015) Divya Prakash Gnanadhas et al. Scientific Reports
- Streptococcus pneumoniae biofilm formation and dispersion during colonization and disease
- (2015) Yashuan Chao et al. Frontiers in Cellular and Infection Microbiology
- Comparative analyses of proteins from Haemophilus influenzae biofilm and planktonic populations using metabolic labeling and mass spectrometry
- (2014) Deborah MB Post et al. BMC MICROBIOLOGY
- Dynamic Changes in the Streptococcus pneumoniae Transcriptome during Transition from Biofilm Formation to Invasive Disease upon Influenza A Virus Infection
- (2014) Melinda M. Pettigrew et al. INFECTION AND IMMUNITY
- Biofilms, flagella, and mechanosensing of surfaces by bacteria
- (2014) Robert Belas TRENDS IN MICROBIOLOGY
- Cyclic di-GMP-dependent Signaling Pathways in the Pathogenic Firmicute Listeria monocytogenes
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- (2013) Yannick DN Tremblay et al. BMC GENOMICS
- Biofilm Formation Avoids Complement Immunity and Phagocytosis of Streptococcus pneumoniae
- (2013) Mirian Domenech et al. INFECTION AND IMMUNITY
- Differential protein expression patterns between planktonic and biofilm cells of Salmonella enterica serovar Enteritidis PT4 on stainless steel surface
- (2013) Efstathios Giaouris et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
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- (2013) L. My et al. JOURNAL OF BACTERIOLOGY
- D-Methionine as a biofilm dispersal signaling molecule enhanced tetrakis hydroxymethyl phosphonium sulfate mitigation ofDesulfovibrio vulgarisbiofilm and biocorrosion pitting
- (2013) D. Xu et al. MATERIALS AND CORROSION-WERKSTOFFE UND KORROSION
- Evaluation of the roles played by Hcp and VgrG type 6 secretion system effectors in Aeromonas hydrophila SSU pathogenesis
- (2013) J. Sha et al. MICROBIOLOGY-SGM
- Molecular Characterization of Host-Specific Biofilm Formation in a Vertebrate Gut Symbiont
- (2013) Steven A. Frese et al. PLoS Genetics
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- The interconnection between biofilm formation and horizontal gene transfer
- (2012) Jonas Stenløkke Madsen et al. FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Identity and Function of a Large Gene Network Underlying Mutagenic Repair of DNA Breaks
- (2012) A. A. M. Al Mamun et al. SCIENCE
- Virtual metagenome reconstruction from 16S rRNA gene sequences
- (2012) Shujiro Okuda et al. Nature Communications
- In VitroDestruction of Streptococcus pneumoniae Biofilms with Bacterial and Phage Peptidoglycan Hydrolases
- (2011) Mirian Domenech et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
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- (2011) Robert C. Edgar et al. BIOINFORMATICS
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- (2011) L. Zhang et al. JOURNAL OF BACTERIOLOGY
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- (2011) Hemanth Nag Noothalapati Venkata et al. JOURNAL OF RAMAN SPECTROSCOPY
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- (2011) J. Dong et al. MICROBIOLOGY-SGM
- Evolution and Adaptation in Pseudomonas aeruginosa Biofilms Driven by Mismatch Repair System-Deficient Mutators
- (2011) Adela M. Luján et al. PLoS One
- Current understanding of multi‐species biofilms
- (2011) Liang Yang et al. International Journal of Oral Science
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Genetic adaptation of Streptococcus mutans during biofilm formation on different types of surfaces
- (2010) Moshe Shemesh et al. BMC MICROBIOLOGY
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- (2010) Dominik Marek Dominiak et al. ENVIRONMENTAL MICROBIOLOGY
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- (2010) E. A. Novak et al. INFECTION AND IMMUNITY
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- Tobramycin and FDA-Approved Iron Chelators EliminatePseudomonas aeruginosaBiofilms on Cystic Fibrosis Cells
- (2009) Sophie Moreau-Marquis et al. AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY
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- (2009) Shea Hamilton et al. BMC GENOMICS
- Aggregatibacter actinomycetemcomitansarcB influences hydrophobic properties, biofilm formation and adhesion to hydroxyapatite
- (2009) PL Longo et al. BRAZILIAN JOURNAL OF MICROBIOLOGY
- Total Syntheses of Casuarine and Its 6-O-α-Glucoside: Complementary Inhibition towards Glycoside Hydrolases of the GH31 and GH37 Families
- (2009) Francesca Cardona et al. CHEMISTRY-A EUROPEAN JOURNAL
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- (2009) S. Felek et al. INFECTION AND IMMUNITY
- ThepurBgene controls rhizosphere colonization byPantoea agglomerans
- (2009) P.S. Chauhan et al. LETTERS IN APPLIED MICROBIOLOGY
- Function and biogenesis of iron–sulphur proteins
- (2009) Roland Lill NATURE
- The developmental model of microbial biofilms: ten years of a paradigm up for review
- (2009) Russell D. Monds et al. TRENDS IN MICROBIOLOGY
- Genetic Dissection of an Exogenously Induced Biofilm in Laboratory and Clinical Isolates of E. coli
- (2009) Sasan Amini et al. PLoS Pathogens
- A Genome-wide Approach to Identify the Genes Involved in Biofilm Formation in E. coli
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- Identification of Streptococcus sanguinis Genes Required for Biofilm Formation and Examination of Their Role in Endocarditis Virulence
- (2008) X. Ge et al. INFECTION AND IMMUNITY
- Increased mutability of Pseudomonas aeruginosa in biofilms
- (2008) K. Driffield et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- IscR Controls Iron-Dependent Biofilm Formation in Escherichia coli by Regulating Type I Fimbria Expression
- (2008) Y. Wu et al. JOURNAL OF BACTERIOLOGY
- Fe-S Cluster Assembly Pathways in Bacteria
- (2008) C. Ayala-Castro et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Uracil influences quorum sensing and biofilm formation inPseudomonas aeruginosaand fluorouracil is an antagonist
- (2008) Akihiro Ueda et al. Microbial Biotechnology
- Significance ofrpoSduring maturation ofEscherichia colibiofilms
- (2007) Akinobu Ito et al. BIOTECHNOLOGY AND BIOENGINEERING
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