Dynamic Changes in the Streptococcus pneumoniae Transcriptome during Transition from Biofilm Formation to Invasive Disease upon Influenza A Virus Infection

The Bacterial Phosphoenolpyruvate:Carbohydrate Phosphotransferase System: Regulation by Protein Phosphorylation and Phosphorylation-Dependent Protein-Protein Interactions

(2014) Josef Deutscher et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The co-pathogenesis of influenza viruses with bacteria in the lung

(2014) Jonathan A. McCullers   NATURE REVIEWS MICROBIOLOGY

Global burden of childhood pneumonia and diarrhoea

(2013) Christa L Fischer Walker et al.   LANCET

Identifying the Interaction Between Influenza and Pneumococcal Pneumonia Using Incidence Data

(2013) S. Shrestha et al.   Science Translational Medicine

Interkingdom Signaling Induces Streptococcus pneumoniae Biofilm Dispersion and Transition from Asymptomatic Colonization to Disease

(2013) L. R. Marks et al.   mBio

Streptococcus pneumoniae Biofilm Formation Is Strain Dependent, Multifactorial, and Associated with Reduced Invasiveness and Immunoreactivity during Colonization

(2013) K. Blanchette-Cain et al.   mBio

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Identification of Genes That Contribute to the Pathogenesis of Invasive Pneumococcal Disease byIn VivoTranscriptomic Analysis

(2012) Abiodun D. Ogunniyi et al.   INFECTION AND IMMUNITY

Pneumococcal Interactions with Epithelial Cells Are Crucial for Optimal Biofilm Formation and ColonizationIn VitroandIn Vivo

(2012) Laura R. Marks et al.   INFECTION AND IMMUNITY

Complete Genome Sequence of Streptococcus pneumoniae Strain ST556, a Multidrug-Resistant Isolate from an Otitis Media Patient

(2012) G. Li et al.   JOURNAL OF BACTERIOLOGY

Identification of a novel pneumococcal vaccine antigen preferentially expressed during meningitis in mice

(2012) Layla K. Mahdi et al.   JOURNAL OF CLINICAL INVESTIGATION

Bacteriocins — a viable alternative to antibiotics?

(2012) Paul D. Cotter et al.   NATURE REVIEWS MICROBIOLOGY

The Prevalence and Risk Factors for Pneumococcal Colonization of the Nasopharynx among Children in Kilifi District, Kenya

(2012) Osman Abdullahi et al.   PLoS One

A Functional Genomics Approach to Establish the Complement of Carbohydrate Transporters in Streptococcus pneumoniae

(2012) Alessandro Bidossi et al.   PLoS One

Activation of P2X7 Receptor by ATP Plays an Important Role in Regulating Inflammatory Responses during Acute Viral Infection

(2012) Benjamin H. Lee et al.   PLoS One

Pneumococcal carbohydrate transport: food for thought

(2012) Carolyn M. Buckwalter et al.   TRENDS IN MICROBIOLOGY

Early acquisition and high nasopharyngeal co-colonisation by Streptococcus pneumoniae and three respiratory pathogens amongst Gambian new-borns and infants

(2011) Brenda A Kwambana et al.   BMC INFECTIOUS DISEASES

Recognition of Streptococcus pneumoniae by the innate immune system

(2011) Uwe Koppe et al.   CELLULAR MICROBIOLOGY

Invasive Bacterial Infections in Relation to Influenza Outbreaks, 2006–2010

(2011) Diana Tasher et al.   CLINICAL INFECTIOUS DISEASES

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

The LuxS-Dependent Quorum-Sensing System Regulates Early Biofilm Formation by Streptococcus pneumoniae Strain D39

(2011) Jorge E. Vidal et al.   INFECTION AND IMMUNITY

LuxS Mediates Iron-Dependent Biofilm Formation, Competence, and Fratricide in Streptococcus pneumoniae

(2011) Claudia Trappetti et al.   INFECTION AND IMMUNITY

Role of Dihydrolipoamide Dehydrogenase in Regulation of Raffinose Transport in Streptococcus pneumoniae

(2011) R. E. Tyx et al.   JOURNAL OF BACTERIOLOGY

Impact of the 2009 Influenza Pandemic on Pneumococcal Pneumonia Hospitalizations in the United States

(2011) Daniel M. Weinberger et al.   JOURNAL OF INFECTIOUS DISEASES

Newborn Vitamin A Supplementation Does Not Affect Nasopharyngeal Carriage of Streptococcus pneumoniae in Bangladeshi Infants at Age 3 Months

(2011) Christian L. Coles et al.   JOURNAL OF NUTRITION

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Extracellular Matrix Formation Enhances the Ability of Streptococcus pneumoniae to Cause Invasive Disease

(2011) Claudia Trappetti et al.   PLoS One

Streptococcus pneumoniae in Biofilms Are Unable to Cause Invasive Disease Due to Altered Virulence Determinant Production

(2011) Carlos J. Sanchez et al.   PLoS One

Quantitative Subcellular Proteome and Secretome Profiling of Influenza A Virus-Infected Human Primary Macrophages

(2011) Niina Lietzén et al.   PLoS Pathogens

Coupled Nucleotide and Mucin Hypersecretion from Goblet-Cell Metaplastic Human Airway Epithelium

(2010) Seiko F. Okada et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Evaluation of Biophotonic Imaging To Estimate Bacterial Burden in Mice Infected with Highly Virulent Compared to Less Virulent Streptococcus pneumoniae Serotypes

(2010) S. Henken et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Sialic Acid Transport Contributes to Pneumococcal Colonization

(2010) Carolyn Marion et al.   INFECTION AND IMMUNITY

Coinfection withHaemophilus influenzaePromotes Pneumococcal Biofilm Formation during Experimental Otitis Media and Impedes the Progression of Pneumococcal Disease

(2010) Kristin E. D. Weimer et al.   JOURNAL OF INFECTIOUS DISEASES

New Patterns in the Otopathogens Causing Acute Otitis Media Six to Eight Years After Introduction of Pneumococcal Conjugate Vaccine

(2010) Janet R. Casey et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

Identification of adenoid biofilms with middle ear pathogens in otitis-prone children utilizing SEM and FISH

(2009) Michael Hoa et al.   INTERNATIONAL JOURNAL OF PEDIATRIC OTORHINOLARYNGOLOGY

Cutting Edge: Sympathetic Nervous System Increases Proinflammatory Cytokines and Exacerbates Influenza A Virus Pathogenesis

(2009) K. M. Grebe et al.   JOURNAL OF IMMUNOLOGY

Sialic Acid: A Preventable Signal for Pneumococcal Biofilm Formation, Colonization, and Invasion of the Host

(2009) Claudia Trappetti et al.   JOURNAL OF INFECTIOUS DISEASES

Burden of disease caused by Streptococcus pneumoniae in children younger than 5 years: global estimates

(2009) Katherine L O'Brien et al.   LANCET

A simple method for directional transcriptome sequencing using Illumina technology

(2009) N. J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Continued Impact of Pneumococcal Conjugate Vaccine on Carriage in Young Children

(2009) S. S. Huang et al.   PEDIATRICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Association of Nasopharyngeal Bacterial Colonization during Upper Respiratory Tract Infection and the Development of Acute Otitis Media

(2008) K. Revai et al.   CLINICAL INFECTIOUS DISEASES

Isolation of Streptococcus pneumoniae Biofilm Mutants and Their Characterization during Nasopharyngeal Colonization

(2008) E. J. Munoz-Elias et al.   INFECTION AND IMMUNITY

Predominant Role of Bacterial Pneumonia as a Cause of Death in Pandemic Influenza: Implications for Pandemic Influenza Preparedness

(2008) David M. Morens et al.   JOURNAL OF INFECTIOUS DISEASES

Inhibition of pulmonary antibacterial defense by interferon-γ during recovery from influenza infection

(2008) Keer Sun et al.   NATURE MEDICINE

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols