- Home
- Publications
- Publication Search
- Publication Details
Title
Editing the microbiome the CRISPR way
Authors
Keywords
-
Journal
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Volume 374, Issue 1772, Pages 20180103
Publisher
The Royal Society
Online
2019-03-25
DOI
10.1098/rstb.2018.0103
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Synthetic Biology Approaches to Engineer Probiotics and Members of the Human Microbiota for Biomedical Applications
- (2018) Josef R. Bober et al. Annual Review of Biomedical Engineering
- The CRISPR/Cas9 system sheds new lights on the biology of protozoan parasites
- (2018) Maciej Grzybek et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Genome engineering of Clostridium difficile using the CRISPR-Cas9 system
- (2018) S. Wang et al. CLINICAL MICROBIOLOGY AND INFECTION
- A Robust CRISPR Interference Gene Repression System in Pseudomonas
- (2018) Sue Zanne Tan et al. JOURNAL OF BACTERIOLOGY
- Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri
- (2018) Emily A. Stout et al. MICROBIOLOGY-SGM
- Tuning dCas9's ability to block transcription enables robust, noiseless knockdown of bacterial genes
- (2018) Antoine Vigouroux et al. Molecular Systems Biology
- Current understanding of the human microbiome
- (2018) Jack A Gilbert et al. NATURE MEDICINE
- Interactions of commensal and pathogenic microorganisms with the intestinal mucosal barrier
- (2018) Eric C. Martens et al. NATURE REVIEWS MICROBIOLOGY
- Streptococcus pneumoniae: transmission, colonization and invasion
- (2018) Jeffrey N. Weiser et al. NATURE REVIEWS MICROBIOLOGY
- Cross-genus rebooting of custom-made, synthetic bacteriophage genomes in L-form bacteria
- (2018) Samuel Kilcher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A CRISPR-Cas9-Based Toolkit for Fast and Precise In Vivo Genetic Engineering of Bacillus subtilis Phages
- (2018) Tobias Schilling et al. Viruses-Basel
- Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection
- (2018) Kelsi Penewit et al. mBio
- Pooled CRISPR interference screening enables genome-scale functional genomics study in bacteria with superior performance
- (2018) Tianmin Wang et al. Nature Communications
- A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9
- (2018) Lun Cui et al. Nature Communications
- Single plasmid systems for inducible dual protein expression and for CRISPR-Cas9/CRISPRi gene regulation in lactic acid bacterium Lactococcus lactis
- (2018) Aleš Berlec et al. Scientific Reports
- Tuning Gene Activity by Inducible and Targeted Regulation of Gene Expression in Minimal Bacterial Cells
- (2018) Ana M. Mariscal et al. ACS Synthetic Biology
- CRISPR-Cas antimicrobials: Challenges and future prospects
- (2018) Elizabeth Pursey et al. PLoS Pathogens
- Oral Administration of Recombinant Saccharomyces boulardii Expressing Ovalbumin-CPE Fusion Protein Induces Antibody Response in Mice
- (2018) Ghasem Bagherpour et al. Frontiers in Microbiology
- Deaminase-mediated multiplex genome editing in Escherichia coli
- (2018) Satomi Banno et al. Nature Microbiology
- Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
- (2018) Johnny H. Hu et al. NATURE
- Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi
- (2018) Jason M. Peters et al. Nature Microbiology
- Rapid and Efficient Genome Editing in Staphylococcus aureus by Using an Engineered CRISPR/Cas9 System
- (2017) Weizhong Chen et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The Gastrointestinal Microbiome: A Review
- (2017) P.C. Barko et al. JOURNAL OF VETERINARY INTERNAL MEDICINE
- CRISPR EnAbled Trackable genome Engineering for isopropanol production in Escherichia coli
- (2017) Liya Liang et al. METABOLIC ENGINEERING
- Large scale validation of an efficient CRISPR/Cas-based multi gene editing protocol in Escherichia coli
- (2017) Francesca Zerbini et al. Microbial Cell Factories
- Extending the Host Range of Bacteriophage Particles for DNA Transduction
- (2017) Ido Yosef et al. MOLECULAR CELL
- High‐throughput CRISPRi phenotyping identifies new essential genes in Streptococcus pneumoniae
- (2017) Xue Liu et al. Molecular Systems Biology
- RNA targeting with CRISPR–Cas13
- (2017) Omar O. Abudayyeh et al. NATURE
- Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
- (2017) Nicole M. Gaudelli et al. NATURE
- RNA editing with CRISPR-Cas13
- (2017) David B. T. Cox et al. SCIENCE
- Designer Probiotics: Paving the Way to Living Therapeutics
- (2017) Birbal Singh et al. TRENDS IN BIOTECHNOLOGY
- Gut Protozoa: Friends or Foes of the Human Gut Microbiota?
- (2017) Magali Chabé et al. TRENDS IN PARASITOLOGY
- Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
- (2017) Aude Bernheim et al. Nature Communications
- Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models
- (2017) In Young Hwang et al. Nature Communications
- Strategies for Editing Virulent Staphylococcal Phages Using CRISPR-Cas10
- (2017) S. M. Nayeemul Bari et al. ACS Synthetic Biology
- Genome Engineering of Virulent Lactococcal Phages Using CRISPR-Cas9
- (2017) Marie-Laurence Lemay et al. ACS Synthetic Biology
- Efficient Transcriptional Gene Repression by Type V-A CRISPR-Cpf1 from Eubacterium eligens
- (2017) Seong Keun Kim et al. ACS Synthetic Biology
- Engineering of Bacteriophage T4 Genome Using CRISPR-Cas9
- (2017) Pan Tao et al. ACS Synthetic Biology
- Exploiting CRISPR-Cas to manipulate Enterococcus faecalis populations
- (2017) Karthik Hullahalli et al. eLife
- A Novel and Efficient Method for Bacteria Genome Editing Employing both CRISPR/Cas9 and an Antibiotic Resistance Cassette
- (2017) Hong Zhang et al. Frontiers in Microbiology
- A CRISPR–Cas9-based gene drive platform for genetic interaction analysis in Candida albicans
- (2017) Rebecca S. Shapiro et al. Nature Microbiology
- Chromosomal Targeting by the Type III-A CRISPR-Cas System Can Reshape Genomes in Staphylococcus aureus
- (2017) Jing Guan et al. mSphere
- Multiplex gene regulation by CRISPR-ddCpf1
- (2017) Xiaochun Zhang et al. Cell Discovery
- Using CRISPR-Cas9-mediated genome editing to generate C. difficile mutants defective in selenoproteins synthesis
- (2017) Kathleen N. McAllister et al. Scientific Reports
- Microbiome therapeutics — Advances and challenges
- (2016) Mark Mimee et al. ADVANCED DRUG DELIVERY REVIEWS
- Metabolic Engineering of Probiotic Saccharomyces boulardii
- (2016) Jing-Jing Liu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Editing of the Bacillus subtilis Genome by the CRISPR-Cas9 System
- (2016) Josef Altenbuchner APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- CRISPR-based genome editing and expression control systems inClostridium acetobutylicumandClostridium beijerinckii
- (2016) Qi Li et al. Biotechnology Journal
- A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria
- (2016) Jason M. Peters et al. CELL
- The Central Nervous System and the Gut Microbiome
- (2016) Gil Sharon et al. CELL
- Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems
- (2016) Ryan T. Leenay et al. MOLECULAR CELL
- Defining synonymous codon compression schemes by genome recoding
- (2016) Kaihang Wang et al. NATURE
- Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
- (2016) Alexis C. Komor et al. NATURE
- Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering
- (2016) Andrew D Garst et al. NATURE BIOTECHNOLOGY
- Applications of CRISPR technologies in research and beyond
- (2016) Rodolphe Barrangou et al. NATURE BIOTECHNOLOGY
- Consequences of Cas9 cleavage in the chromosome ofEscherichia coli
- (2016) Lun Cui et al. NUCLEIC ACIDS RESEARCH
- Healthy human gut phageome
- (2016) Pilar Manrique et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
- (2016) K. Nishida et al. SCIENCE
- C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
- (2016) Omar O. Abudayyeh et al. SCIENCE
- CRISPR-based genome editing and expression control systems inClostridium acetobutylicumandClostridium beijerinckii
- (2016) Qi Li et al. Biotechnology Journal
- CRMAGE: CRISPR Optimized MAGE Recombineering
- (2016) Carlotta Ronda et al. Scientific Reports
- A CRISPR-Cas9 Assisted Non-Homologous End-Joining Strategy for One-step Engineering of Bacterial Genome
- (2016) Tianyuan Su et al. Scientific Reports
- Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase
- (2015) Tao Xu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System
- (2015) Yu Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
- (2015) Bernd Zetsche et al. CELL
- Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system
- (2015) Yi Wang et al. JOURNAL OF BIOTECHNOLOGY
- CRISPR-Cas immunity in prokaryotes
- (2015) Luciano A. Marraffini NATURE
- An updated evolutionary classification of CRISPR–Cas systems
- (2015) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Temperate and lytic bacteriophages programmed to sensitize and kill antibiotic-resistant bacteria
- (2015) Ido Yosef et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CRISPR-based screening of genomic island excision events in bacteria
- (2015) Kurt Selle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene silencing by CRISPR interference in mycobacteria
- (2015) Eira Choudhary et al. Nature Communications
- The no-SCAR (Scarless Cas9 Assisted Recombineering) system for genome editing in Escherichia coli
- (2015) Chris R. Reisch et al. Scientific Reports
- CRISPR-Cas9 Based Engineering of Actinomycetal Genomes
- (2015) Yaojun Tong et al. ACS Synthetic Biology
- Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing
- (2015) Hiroki Ando et al. Cell Systems
- Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota
- (2015) Mark Mimee et al. Cell Systems
- A Candida albicans CRISPR system permits genetic engineering of essential genes and gene families
- (2015) V. K. Vyas et al. Science Advances
- Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases
- (2014) Robert J Citorik et al. NATURE BIOTECHNOLOGY
- Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials
- (2014) David Bikard et al. NATURE BIOTECHNOLOGY
- Efficient CRISPR-Cas9–mediated genome editing in Plasmodium falciparum
- (2014) Jeffrey C Wagner et al. NATURE METHODS
- Efficient programmable gene silencing by Cascade
- (2014) Devashish Rath et al. NUCLEIC ACIDS RESEARCH
- CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophages
- (2014) Bruno Martel et al. NUCLEIC ACIDS RESEARCH
- Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression
- (2014) Michelle L. Luo et al. NUCLEIC ACIDS RESEARCH
- CRISPR–Cas9-assisted recombineering in Lactobacillus reuteri
- (2014) Jee-Hwan Oh et al. NUCLEIC ACIDS RESEARCH
- Efficient engineering of a bacteriophage genome using the type I-E CRISPR-Cas system
- (2014) Ruth Kiro et al. RNA Biology
- Exploiting gut bacteriophages for human health
- (2014) Marion Dalmasso et al. TRENDS IN MICROBIOLOGY
- Programmable Removal of Bacterial Strains by Use of Genome-Targeting CRISPR-Cas Systems
- (2014) A. A. Gomaa et al. mBio
- Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
- (2013) Lei S. Qi et al. CELL
- CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
- (2013) Luke A. Gilbert et al. CELL
- RNA-guided editing of bacterial genomes using CRISPR-Cas systems
- (2013) Wenyan Jiang et al. NATURE BIOTECHNOLOGY
- Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
- (2013) David Bikard et al. NUCLEIC ACIDS RESEARCH
- Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
- (2013) James E. DiCarlo et al. NUCLEIC ACIDS RESEARCH
- Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands
- (2013) Reuben B. Vercoe et al. PLoS Genetics
- CRISPR Interference Can Prevent Natural Transformation and Virulence Acquisition during In Vivo Bacterial Infection
- (2012) David Bikard et al. Cell Host & Microbe
- Clostridium difficile Carriage in Healthy Infants in the Community: A Potential Reservoir for Pathogenic Strains
- (2012) C. Rousseau et al. CLINICAL INFECTIOUS DISEASES
- A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
- (2012) M. Jinek et al. SCIENCE
- Inhibition of the cytotoxic effect of Clostridium difficile in vitro by Clostridium butyricum MIYAIRI 588 strain
- (2011) T. D. H. Woo et al. JOURNAL OF MEDICAL MICROBIOLOGY
- CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
- (2011) Elitza Deltcheva et al. NATURE
- The Escherichia coli CRISPR System Protects from Lysogenization, Lysogens, and Prophage Induction
- (2010) R. Edgar et al. JOURNAL OF BACTERIOLOGY
- Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model
- (2010) F. Duan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Self-targeting by CRISPR: gene regulation or autoimmunity?
- (2010) Adi Stern et al. TRENDS IN GENETICS
- Genetically engineered phage harbouring the lethal catabolite gene activator protein gene with an inducer-independent promoter for biocontrol ofEscherichia coli
- (2009) Zahra Moradpour et al. FEMS MICROBIOLOGY LETTERS
- Human-derived probiotic Lactobacillus reuteri demonstrate antimicrobial activities targeting diverse enteric bacterial pathogens
- (2008) Jennifer K. Spinler et al. ANAEROBE
- Probiotic Lactobacillus reuteri suppress proinflammatory cytokines via c-Jun
- (2008) Yea Ping Lin et al. INFLAMMATORY BOWEL DISEASES
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now