High-throughput and parallel SNP discovery in selected candidate genes inEucalyptus camaldulensisusing Illumina NGS platform

Genetic association studies in Eucalyptus pilularis Smith (blackbutt)

(2013) Timothy R. Sexton et al.   AUSTRALIAN FORESTRY

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

(2011) Dario Grattapaglia et al.   BMC PLANT BIOLOGY

High levels of nucleotide diversity and fast decline of linkage disequilibrium in rye (Secale cereale L.) genes involved in frost response

(2011) Yongle Li et al.   BMC PLANT BIOLOGY

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

(2011) Zhi Wei et al.   NUCLEIC ACIDS RESEARCH

Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing†

(2011) Ardashir Kharabian-Masouleh et al.   PLANT BIOTECHNOLOGY JOURNAL

Fast-forward genetics enabled by new sequencing technologies

(2011) Korbinian Schneeberger et al.   TRENDS IN PLANT SCIENCE

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

(2010) David L Hyten et al.   BMC GENOMICS

Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte

(2010) Dongfang Wang et al.   BMC PLANT BIOLOGY

Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice

(2010) Jiang Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ten years of genetics and genomics: what have we achieved and where are we heading?

(2010) Edith Heard et al.   NATURE REVIEWS GENETICS

In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?

(2010) Camille Lepoittevin et al.   PLoS One

Quantitative trait locus (QTL) analysis of growth and vegetative propagation traits in Eucalyptus nitens full-sib families

(2010) Bala R. Thumma et al.   Tree Genetics & Genomes

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

(2009) Carsten Külheim et al.   BMC GENOMICS

Identification of a Cis-Acting Regulatory Polymorphism in a Eucalypt COBRA-Like Gene Affecting Cellulose Content

(2009) B. R. Thumma et al.   GENETICS

Genes for control of plant stature and form

(2009) Victor B. Busov et al.   NEW PHYTOLOGIST

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

(2009) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

(2009) W. Muchero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

The Complementary Neighborhood Patterns and Methylation-to-Mutation Likelihood Structures of 15,110 Single-Nucleotide Polymorphisms in the Bovine Genome

(2008) Z. Jiang et al.   GENETICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Eucalyptusapplied genomics: from gene sequences to breeding tools

(2008) Dario Grattapaglia et al.   NEW PHYTOLOGIST

Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution

(2008) Szymon M. Kiełbasa et al.   PLoS One