Gene Editing and Systems Biology Tools for Pesticide Bioremediation: A Review
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Gene Editing and Systems Biology Tools for Pesticide Bioremediation: A Review
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-02-13
DOI
10.3389/fmicb.2019.00087
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Crop spatiotemporal dominance is a better predictor of pest and predator abundance than traditional partial approaches
- (2018) Rebecca A. Schmidt-Jeffris et al. AGRICULTURE ECOSYSTEMS & ENVIRONMENT
- Profiling microbial strains in urban environments using metagenomic sequencing data
- (2018) Moreno Zolfo et al. Biology Direct
- Biostimulation and bioaugmentation of native microbial community accelerated bioremediation of oil refinery sludge
- (2018) Ajoy Roy et al. BIORESOURCE TECHNOLOGY
- Shooting the messenger: RNA-targetting CRISPR-Cas systems
- (2018) Yifan Zhu et al. BIOSCIENCE REPORTS
- Genetic tool development and systemic regulation in biosynthetic technology
- (2018) Zhongxue Dai et al. Biotechnology for Biofuels
- Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering
- (2018) Takayuki Arazoe et al. Biotechnology Journal
- Formation and Cleavage of C–C Bonds by Enzymatic Oxidation–Reduction Reactions
- (2018) F. Peter Guengerich et al. CHEMICAL REVIEWS
- Effects of two ecological earthworm species on atrazine degradation performance and bacterial community structure in red soil
- (2018) Zhong Lin et al. CHEMOSPHERE
- Application of molecular docking for the degradation of organic pollutants in the environmental remediation: A review
- (2018) Zhifeng Liu et al. CHEMOSPHERE
- Comparative metagenomics reveals different hydrocarbon degradative abilities from enriched oil-drilling waste
- (2018) Amanda P. Napp et al. CHEMOSPHERE
- Testing the efficiency of a bacterial community-based index (microgAMBI) to assess distinct impact sources in six locations around the world
- (2018) Angel Borja ECOLOGICAL INDICATORS
- A systems-level approach for investigating organophosphorus pesticide toxicity
- (2018) Jingbo Zhu et al. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
- Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation
- (2018) Alaine B. Guerra et al. ENVIRONMENTAL POLLUTION
- Autochthonous Bioaugmentation-Modified Bacterial Diversity of Phenanthrene Degraders in PAH-Contaminated Wastewater as Revealed by DNA-Stable Isotope Probing
- (2018) Jibing Li et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Advances in Engineering the Fly Genome with the CRISPR-Cas System
- (2018) Ethan Bier et al. GENETICS
- Long-term effects of organic amendments on bacterial and fungal communities in a degraded Mediterranean soil
- (2018) María M. Montiel-Rozas et al. GEODERMA
- The Green ChemisTREE: 20 years after taking root with the 12 principles
- (2018) Hanno C. Erythropel et al. GREEN CHEMISTRY
- Synthesis, characterization of a ternary Cu(II) Schiff base complex with degradation activity of organophosphorus pesticides
- (2018) Xin Li et al. INORGANICA CHIMICA ACTA
- An integrative approach toward biosensing and bioremediation of metals and metalloids
- (2018) A. Shukla et al. International Journal of Environmental Science and Technology
- Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil
- (2018) Hernando P. Bacosa et al. ISME Journal
- Interaction of Chemical Pesticides and Their Formulation Ingredients with Microbes Associated with Plants and Plant Pests
- (2018) Stephen O. Duke JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Integrated pest management for resource-limited farmers: challenges for achieving ecological, social and economic sustainability
- (2018) D. G. Bottrell et al. JOURNAL OF AGRICULTURAL SCIENCE
- Pesticide residues in milk and their relationship with pesticide contamination of feedstuffs supplied to dairy cattle in Punjab (India)
- (2018) J. Bedi et al. JOURNAL OF ANIMAL AND FEED SCIENCES
- xMaP—An Interpretable Alignment-Free Four-Dimensional Quantitative Structure–Activity Relationship Technique Based on Molecular Surface Properties and Conformer Ensembles
- (2018) Jan Dreher et al. Journal of Chemical Information and Modeling
- Recent advances in the bio-remediation of persistent organic pollutants and its effect on environment
- (2018) Nisha Gaur et al. JOURNAL OF CLEANER PRODUCTION
- Contemporary enzyme based technologies for bioremediation: A review
- (2018) Babita Sharma et al. JOURNAL OF ENVIRONMENTAL MANAGEMENT
- Rhodococcus wratislaviensis strain 9: An efficient p -nitrophenol degrader with a great potential for bioremediation
- (2018) Suresh R. Subashchandrabose et al. JOURNAL OF HAZARDOUS MATERIALS
- 16S metagenomic analysis reveals adaptability of a mixed-PAH-degrading consortium isolated from crude oil-contaminated seawater to changing environmental conditions
- (2018) Chanokporn Muangchinda et al. JOURNAL OF HAZARDOUS MATERIALS
- High-throughput metaproteomics data analysis with Unipept: A tutorial
- (2018) Bart Mesuere et al. Journal of Proteomics
- Magnetic core micelles as a nanosorbent for the efficient removal and recovery of three organophosphorus pesticides from fruit juice and environmental water samples
- (2018) Raheleh Hamedi et al. JOURNAL OF SEPARATION SCIENCE
- Highly robust AgIO 3 /MIL-53 (Fe) nanohybrid composites for degradation of organophosphorus pesticides in single and binary systems: Application of artificial neural networks modelling
- (2018) Akeem Adeyemi Oladipo et al. Journal of the Taiwan Institute of Chemical Engineers
- Biodegradation of anthracene and several PAHs by the marine-derived fungus Cladosporium sp. CBMAI 1237
- (2018) Willian G. Birolli et al. MARINE POLLUTION BULLETIN
- Genome editing and transcriptional repression in Pseudomonas putida KT2440 via the type II CRISPR system
- (2018) Jun Sun et al. Microbial Cell Factories
- Bioremediation and microbial metabolism of benzo(a)pyrene
- (2018) E M Ostrem Loss et al. MOLECULAR MICROBIOLOGY
- Chemically Modified Cpf1-CRISPR RNAs Mediate Efficient Genome Editing in Mammalian Cells
- (2018) Moira A. McMahon et al. MOLECULAR THERAPY
- Designing microbial consortia with defined social interactions
- (2018) Wentao Kong et al. Nature Chemical Biology
- CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms
- (2018) Rebecca S. Shapiro et al. NATURE REVIEWS MICROBIOLOGY
- Identification of Meloidogyne spp. associated with agri- and horticultural crops in South Africa
- (2018) Melissa Visagie et al. NEMATOLOGY
- Genome-wide association mapping of the architecture of susceptibility to the root-knot nematode Meloidogyne incognita in Arabidopsis thaliana
- (2018) Sonja Warmerdam et al. NEW PHYTOLOGIST
- Plant-Parasitic Algae (Cephaleuros spp.) in Thailand, Including Four New Records
- (2018) Prisana Wonglom et al. PACIFIC SCIENCE
- Microbial Degradation of Organophosphate Pesticides: A Review
- (2018) Shardendu KUMAR et al. PEDOSPHERE
- Genome editing in plants: Advancing crop transformation and overview of tools
- (2018) Tariq Shah et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Bioavailability of weathered hydrocarbons in engine oil-contaminated soil: Impact of bioaugmentation mediated by Pseudomonas spp. on bioremediation
- (2018) Kavitha Ramadass et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Do we have to choose between feeding the human population and conserving nature? Modelling the global dependence of people on ecosystem services
- (2018) Victor Cazalis et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Evaluating in situ biodegradation of 13 C-labelled naphthenic acids in groundwater near oil sands tailings ponds
- (2018) Jason M.E. Ahad et al. SCIENCE OF THE TOTAL ENVIRONMENT
- In vitro PPARγ agonistic potential of chitin synthesis inhibitors and their energy metabolism-related hepatotoxicity
- (2018) Xia Ning et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Microbe and plant assisted-remediation of organic xenobiotics and its enhancement by genetically modified organisms and recombinant technology: A review
- (2018) Imran Hussain et al. SCIENCE OF THE TOTAL ENVIRONMENT
- An engineered Pseudomonas putida can simultaneously degrade organophosphates, pyrethroids and carbamates
- (2018) Ting Gong et al. SCIENCE OF THE TOTAL ENVIRONMENT
- A colorimetric sensor array based on sulfuric acid assisted KMnO 4 fading for the detection and identification of pesticides
- (2018) Li’na Qiao et al. TALANTA
- CRISPR-Based Antibacterials: Transforming Bacterial Defense into Offense
- (2018) Adrienne C. Greene TRENDS IN BIOTECHNOLOGY
- Engineering PGPMOs through Gene Editing and Systems Biology: A Solution for Phytoremediation?
- (2018) Supratim Basu et al. TRENDS IN BIOTECHNOLOGY
- Determining the Specificity of Cascade Binding, Interference, and Primed Adaptation In Vivo in the Escherichia coli Type I-E CRISPR-Cas System
- (2018) Lauren A. Cooper et al. mBio
- Exploration of Enzyme Diversity by Integrating Bioinformatics with Expression Analysis and Biochemical Characterization
- (2018) Pavel Vanacek et al. ACS Catalysis
- Inducible high-efficiency CRISPR-Cas9-targeted gene editing and precision base editing in African trypanosomes
- (2018) Eva Rico et al. Scientific Reports
- Enumerating all possible biosynthetic pathways in metabolic networks
- (2018) Aarthi Ravikrishnan et al. Scientific Reports
- Spatial and temporal distribution of pesticides and PCBs in the atmosphere using XAD-resin based passive samplers: A case study in the Quequén Grande River watershed, Argentina
- (2018) M.F. Silva-Barni et al. Atmospheric Pollution Research
- Engineering virus resistance via CRISPR–Cas systems
- (2018) Ahmed Mahas et al. Current Opinion in Virology
- Biomass Allocation, Plantlet Survival, and Chemical Control of the Invasive Chandelier Plant (Kalanchoe delagoensis) (Crassulaceae)
- (2018) Azalea Guerra-García et al. Invasive Plant Science and Management
- Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering
- (2018) Takayuki Arazoe et al. Biotechnology Journal
- Quantitative structure–activity relationships for primary aerobic biodegradation of organic chemicals in pristine surface waters: starting points for predicting biodegradation under acclimatization
- (2018) Tom M. Nolte et al. Environmental Science-Processes & Impacts
- A Genomic Outlook on Bioremediation: The Case of Arsenic Removal
- (2018) Frédéric Plewniak et al. Frontiers in Microbiology
- Metagenomic Functional Potential Predicts Degradation Rates of a Model Organophosphorus Xenobiotic in Pesticide Contaminated Soils
- (2018) Thomas C. Jeffries et al. Frontiers in Microbiology
- A Retrospective Review of Microbiological Methods Applied in Studies Following the Deepwater Horizon Oil Spill
- (2018) Shuangfei Zhang et al. Frontiers in Microbiology
- Aspergillus terreus Inhibits Growth and Induces Morphological Abnormalities in Pythium aphanidermatum and Suppresses Pythium-Induced Damping-Off of Cucumber
- (2018) Boshra A. Halo et al. Frontiers in Microbiology
- Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches
- (2018) Muneer A. Malla et al. Frontiers in Microbiology
- Advances in Engineering the Fly Genome with the CRISPR-Cas System
- (2018) Ethan Bier et al. GENETICS
- Effectiveness of Fungicide on Soybean Rust in the Southeastern United States: A Meta-Analysis
- (2018) Mary Delaney et al. Sustainability
- Making Conventional Agriculture Environmentally Friendly: Moving beyond the Glorification of Organic Agriculture and the Demonization of Conventional Agriculture
- (2018) Alon Tal Sustainability
- Integrated pest management for resource-limited farmers: challenges for achieving ecological, social and economic sustainability
- (2018) D. G. Bottrell et al. JOURNAL OF AGRICULTURAL SCIENCE
- In situ field trial to evaluate the efficacy of Cutrine Ultra to manage a cyanobacteria population in a drinking water source
- (2018) Elizabeth A. Crafton et al. Environmental Science-Water Research & Technology
- The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR–Cas subtype III-Bv system
- (2018) Juliane Behler et al. Nature Microbiology
- Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs
- (2018) Jennifer Listgarten et al. Nature Biomedical Engineering
- Enhanced and Complete Removal of Phenylurea Herbicides by Combinational Transgenic Plant-Microbe Remediation
- (2018) Xin Yan et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Engineering plant architecture via CRISPR/Cas9-mediated alteration of strigolactone biosynthesis
- (2018) Haroon Butt et al. BMC PLANT BIOLOGY
- Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d
- (2018) Cheng Zhang et al. CELL
- Bioremediation through microbes: systems biology and metabolic engineering approach
- (2018) Arun Kumar Dangi et al. CRITICAL REVIEWS IN BIOTECHNOLOGY
- Integrating genetic and protein–protein interaction networks maps a functional wiring diagram of a cell
- (2018) Benjamin VanderSluis et al. CURRENT OPINION IN MICROBIOLOGY
- Understanding how microbiomes influence the systems they inhabit
- (2018) Ed K. Hall et al. Nature Microbiology
- Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data
- (2018) Xuefeng Gao et al. Frontiers in Microbiology
- Maternal residential pesticide use during pregnancy and risk of malignant childhood brain tumors: A pooled analysis of the ESCALE and ESTELLE studies (SFCE)
- (2017) Nicolas Vidart d'Egurbide Bagazgoïtia et al. INTERNATIONAL JOURNAL OF CANCER
- Bioremediation of chromium(VI) by Stenotrophomonas maltophilia isolated from tannery effluent
- (2017) N. M. Raman et al. International Journal of Environmental Science and Technology
- CRISPR Editing in Biological and Biomedical Investigation
- (2017) Xing-Da Ju et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Recent Advances in CRISPR-Cas9 Genome Editing Technology for Biological and Biomedical Investigations
- (2017) Vijai Singh et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Genetic basis and importance of metal resistant genes in bacteria for bioremediation of contaminated environments with toxic metal pollutants
- (2016) Surajit Das et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- The ways to increase efficiency of soil bioremediation
- (2016) Elżbieta Wołejko et al. Ecological Chemistry and Engineering S-Chemia I Inzynieria Ekologiczna S
- In situ toxicity and ecological risk assessment of agro-pesticide runoff in the Madre de Dios River in Costa Rica
- (2016) Silvia Echeverría-Sáenz et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Target DNA recognition and cleavage by a reconstituted Type I-G CRISPR-Cas immune effector complex
- (2016) Sonali Majumdar et al. EXTREMOPHILES
- Metabolic Engineering of Pseudomonas putida KT2440 for Complete Mineralization of Methyl Parathion and γ-Hexachlorocyclohexane
- (2016) Ting Gong et al. ACS Synthetic Biology
- Pyrethroid-Degrading Microorganisms and Their Potential for the Bioremediation of Contaminated Soils: A Review
- (2016) Mariusz Cycoń et al. Frontiers in Microbiology
- Moving Toward a Comprehensive Map of Central Plant Metabolism
- (2015) Ronan Sulpice et al. Annual Review of Plant Biology
- Factors affecting the cost of weed biocontrol programs in New Zealand
- (2015) Quentin Paynter et al. BIOLOGICAL CONTROL
- Integration of bioinformatics to biodegradation
- (2014) Pankaj Arora et al. BIOLOGICAL PROCEDURES ONLINE
- The long-term adaptation of bacterial communities in metal-contaminated sediments: a metaproteogenomic study
- (2014) David C. Gillan et al. ENVIRONMENTAL MICROBIOLOGY
- Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
- (2014) Olivia U Mason et al. ISME Journal
- Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency
- (2014) R. Denaro et al. Marine Genomics
- Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure
- (2014) Alessandro Ciranna et al. Microbial Cell Factories
- 16S rDNA Pyrosequencing Analysis of Bacterial Community in Heavy Metals Polluted Soils
- (2014) Marcin Gołębiewski et al. MICROBIAL ECOLOGY
- Comparative Analysis of Two Emerging Rice Seed Bacterial Pathogens
- (2013) P. A. Fory et al. PHYTOPATHOLOGY
- Evaluating Pesticide Degradation in the Environment: Blind Spots and Emerging Opportunities
- (2013) K. Fenner et al. SCIENCE
- Metagenomic analysis reveals potential biodegradation pathways of persistent pesticides in freshwater and marine sediments
- (2013) Hua Fang et al. SCIENCE OF THE TOTAL ENVIRONMENT
- PTID: an integrated web resource and computational tool for agrochemical discovery
- (2012) Jiayu Gong et al. BIOINFORMATICS
- Field distribution and activity of chlorinated solvents degrading bacteria by combining CARD-FISH and real time PCR
- (2012) B. Matturro et al. New Biotechnology
- Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils
- (2012) Etienne Yergeau et al. PLoS One
- Integrated Perspective for Effective Bioremediation
- (2011) Vasundhara Paliwal et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities
- (2011) Hikaru Suenaga ENVIRONMENTAL MICROBIOLOGY
- Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution
- (2011) Henrique Fragoso dos Santos et al. PLoS One
- Advances in molecular and “-omics” technologies to gauge microbial communities and bioremediation at xenobiotic/anthropogen contaminated sites
- (2009) Chirayu Desai et al. BIORESOURCE TECHNOLOGY
- Metabolic pathway analysis of glycerol metabolism inKlebsiella pneumoniaeincorporating oxygen regulatory system
- (2009) Qingrui Zhang et al. BIOTECHNOLOGY PROGRESS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now