Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities

Use of Ichip for High-Throughput In Situ Cultivation of "Uncultivable" Microbial Species

(2010) D. Nichols et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1

(2010) T. R. Miller et al.   JOURNAL OF BACTERIOLOGY

A Primer on Metagenomics

(2010) John C. Wooley et al.   PLoS Computational Biology

Tetracycline Resistome of the Organic Pig Gut

(2009) K. A. Kazimierczak et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Toward Cloning of the Magnetotactic Metagenome: Identification of Magnetosome Island Gene Clusters in Uncultivated Magnetotactic Bacteria from Different Aquatic Sediments

(2009) C. Jogler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The effect of sequencing errors on metagenomic gene prediction

(2009) Katharina J Hoff   BMC GENOMICS

The molecular basis for adaptive evolution in novel extradiol dioxygenases retrieved from the metagenome

(2009) Hikaru Suenaga et al.   FEMS MICROBIOLOGY ECOLOGY

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis

(2009) Hikaru Suenaga et al.   ISME Journal

Continuous base identification for single-molecule nanopore DNA sequencing

(2009) James Clarke et al.   Nature Nanotechnology

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

(2009) Alexandra M. Schnoes et al.   PLoS Computational Biology

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

Metagenomic Screening for Bleomycin Resistance Genes

(2008) T. Mori et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach

(2008) S. Demaneche et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomics: Read Length Matters

(2008) K. E. Wommack et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Magnetotactic Bacteria and Magnetosomes

(2008) Damien Faivre et al.   CHEMICAL REVIEWS

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

(2008) Josh D. Neufeld et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional activity of paddy soil bacterial communities

(2008) Pravin Malla Shrestha et al.   ENVIRONMENTAL MICROBIOLOGY

CoastalSynechococcusmetagenome reveals major roles for horizontal gene transfer and plasmids in population diversity

(2008) B. Palenik et al.   ENVIRONMENTAL MICROBIOLOGY

A rare SAR11 fosmid clone confirming genetic variability in the ‘Candidatus Pelagibacter ubique’ genome

(2008) Jack A Gilbert et al.   ISME Journal

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

High-resolution metagenomics targets specific functional types in complex microbial communities

(2008) Marina G Kalyuzhnaya et al.   NATURE BIOTECHNOLOGY

Cultivating previously uncultured soil bacteria using a soil substrate membrane system

(2008) Belinda C Ferrari et al.   Nature Protocols

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS