A Retrospective Review of Microbiological Methods Applied in Studies Following the Deepwater Horizon Oil Spill
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A Retrospective Review of Microbiological Methods Applied in Studies Following the Deepwater Horizon Oil Spill
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 9, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2018-03-23
DOI
10.3389/fmicb.2018.00520
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Deep-Sea Microbial Community from the Amazonian Basin Associated with Oil Degradation
- (2017) Mariana E. Campeão et al. Frontiers in Microbiology
- Potential Environmental Factors Affecting Oil-Degrading Bacterial Populations in Deep and Surface Waters of the Northern Gulf of Mexico
- (2017) Jiqing Liu et al. Frontiers in Microbiology
- Targeted metagenomics of active microbial populations with stable-isotope probing
- (2016) Sara Coyotzi et al. CURRENT OPINION IN BIOTECHNOLOGY
- Development of a group-specific 16S rRNA-targeted probe set for the identification of Marinobacter by fluorescence in situ hybridization
- (2016) Luke J. McKay et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Examining the diversity of microbes in a deep-sea coral community impacted by the Deepwater Horizon oil spill
- (2016) R.L. Simister et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Pulsed blooms and persistent oil-degrading bacterial populations in the water column during and after the Deepwater Horizon blowout
- (2016) Tingting Yang et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Metagenomic applications in environmental monitoring and bioremediation
- (2016) Stephen M. Techtmann et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Population Dynamics and Community Composition of Ammonia Oxidizers in Salt Marshes after the Deepwater Horizon Oil Spill
- (2016) Anne E. Bernhard et al. Frontiers in Microbiology
- Challenging Oil Bioremediation at Deep-Sea Hydrostatic Pressure
- (2016) Alberto Scoma et al. Frontiers in Microbiology
- Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill
- (2016) Nina Dombrowski et al. Nature Microbiology
- Co-acclimation of bacterial communities under stresses of hydrocarbons with different structures
- (2016) Hui Wang et al. Scientific Reports
- Microbial Responses to the Deepwater Horizon Oil Spill: From Coastal Wetlands to the Deep Sea
- (2015) G.M. King et al. Annual Review of Marine Science
- Microbial Community Composition, Functions, and Activities in the Gulf of Mexico 1 Year after the Deepwater Horizon Accident
- (2015) Etienne Yergeau et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bacterial PAH degradation in marine and terrestrial habitats
- (2015) Joaquim Vila et al. CURRENT OPINION IN BIOTECHNOLOGY
- Metagenomics for the discovery of novel biosurfactants of environmental interest from marine ecosystems
- (2015) Stephen A Jackson et al. CURRENT OPINION IN BIOTECHNOLOGY
- Oil Biodegradation and Oil-Degrading Microbial Populations in Marsh Sediments Impacted by Oil from the Deepwater Horizon Well Blowout
- (2015) Ronald M. Atlas et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume
- (2015) Sara Kleindienst et al. ISME Journal
- Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill
- (2015) Luis M Rodriguez-R et al. ISME Journal
- Differentiating the roles of photooxidation and biodegradation in the weathering of Light Louisiana Sweet crude oil in surface water from the Deepwater Horizon site
- (2015) Hernando P. Bacosa et al. MARINE POLLUTION BULLETIN
- The Transporter Classification Database (TCDB): recent advances
- (2015) Milton H. Saier et al. NUCLEIC ACIDS RESEARCH
- Chemical dispersants can suppress the activity of natural oil-degrading microorganisms
- (2015) Sara Kleindienst et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Oil spill problems and sustainable response strategies through new technologies
- (2015) Irena B. Ivshina et al. Environmental Science-Processes & Impacts
- Natural Sunlight Shapes Crude Oil-Degrading Bacterial Communities in Northern Gulf of Mexico Surface Waters
- (2015) Hernando P. Bacosa et al. Frontiers in Microbiology
- Applications and impacts of stable isotope probing for analysis of microbial interactions
- (2014) Wolf-Rainer Abraham APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Microbial Dynamics Following the Macondo Oil Well Blowout across Gulf of Mexico Environments
- (2014) Samantha B. Joye et al. BIOSCIENCE
- The unseen world: environmental microbial sequencing and identification methods for ecologists
- (2014) Naupaka Zimmerman et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
- (2014) Olivia U Mason et al. ISME Journal
- Microbial transformation of the Deepwater Horizon oil spill—past, present, and future perspectives
- (2014) Nikole E. Kimes et al. Frontiers in Microbiology
- Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
- (2014) Olivia U. Mason et al. Frontiers in Microbiology
- Current Challenges in the Bioinformatics of Single Cell Genomics
- (2014) Luwen Ning et al. Frontiers in Oncology
- MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information
- (2013) Kishori M Konwar et al. BMC BIOINFORMATICS
- Phylogenetic diversity of bacterial communities associated with bioremediation of crude oil in microcosms
- (2013) Hui Wang et al. INTERNATIONAL BIODETERIORATION & BIODEGRADATION
- Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP
- (2013) Tony Gutierrez et al. ISME Journal
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill
- (2013) Nikole E. Kimes et al. Frontiers in Microbiology
- Next-generation sequencing technology in clinical virology
- (2012) M.R. Capobianchi et al. CLINICAL MICROBIOLOGY AND INFECTION
- Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
- (2012) Jacob Baelum et al. ENVIRONMENTAL MICROBIOLOGY
- The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs
- (2012) Ryan A Lesniewski et al. ISME Journal
- Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
- (2012) Olivia U Mason et al. ISME Journal
- Genomic sequencing of uncultured microorganisms from single cells
- (2012) Roger S. Lasken NATURE REVIEWS MICROBIOLOGY
- Microbial interactions: from networks to models
- (2012) Karoline Faust et al. NATURE REVIEWS MICROBIOLOGY
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill
- (2012) Melanie J. Beazley et al. PLoS One
- Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico
- (2012) Romy Chakraborty et al. Frontiers in Microbiology
- Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill
- (2011) Joel E. Kostka et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Gulf of Mexico Oil Blowout Increases Risks to Globally Threatened Species
- (2011) Claudio Campagna et al. BIOSCIENCE
- Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
- (2011) Matthew B. Scholz et al. CURRENT OPINION IN BIOTECHNOLOGY
- The Early Psychological Impacts of the Deepwater Horizon Oil Spill on Florida and Alabama Communities
- (2011) Lynn M. Grattan et al. ENVIRONMENTAL HEALTH PERSPECTIVES
- An integrated semiconductor device enabling non-optical genome sequencing
- (2011) Jonathan M. Rothberg et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill
- (2011) M. C. Redmond et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes
- (2011) A. Whitehead et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identifying polycyclic aromatic hydrocarbon-degrading bacteria in oil-contaminated surface waters at Deepwater Horizon by cultivation, stable isotope probing and pyrosequencing
- (2011) Tony Gutierrez REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY
- A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico
- (2011) J. D. Kessler et al. SCIENCE
- Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2
- (2011) J. Zhou et al. mBio
- Savant: genome browser for high-throughput sequencing data
- (2010) M. Fiume et al. BIOINFORMATICS
- Polycyclic aromatic hydrocarbons (PAHs) in surface sediments of Liaodong Bay, Bohai Sea, China
- (2010) Ningjing Hu et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
- (2010) Zhili He et al. ISME Journal
- Size-resolved culturable airborne bacteria sampled in rice field, sanitary landfill, and waste incineration sites
- (2010) Yongju Heo et al. JOURNAL OF ENVIRONMENTAL MONITORING
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation
- (2010) H. Hou et al. NUCLEIC ACIDS RESEARCH
- First Investigation of the Microbiology of the Deepest Layer of Ocean Crust
- (2010) Olivia U. Mason et al. PLoS One
- Tracking Hydrocarbon Plume Transport and Biodegradation at Deepwater Horizon
- (2010) Richard Camilli et al. SCIENCE
- Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
- (2010) Terry C. Hazen et al. SCIENCE
- Magnitude of the 2010 Gulf of Mexico Oil Leak
- (2010) Timothy J. Crone et al. SCIENCE
- Propane Respiration Jump-Starts Microbial Response to a Deep Oil Spill
- (2010) David L. Valentine et al. SCIENCE
- ERIC-PCR identification of the spread of airborne Escherichia coli in pig houses
- (2010) W. Yuan et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Functional Molecular Ecological Networks
- (2010) J. Zhou et al. mBio
- Tablet--next generation sequence assembly visualization
- (2009) I. Milne et al. BIOINFORMATICS
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts
- (2009) Falk Warnecke et al. JOURNAL OF BIOTECHNOLOGY
- Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere
- (2009) H. Schafer et al. JOURNAL OF EXPERIMENTAL BOTANY
- Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column
- (2009) Yanmei Shi et al. NATURE
- Assembling the Marine Metagenome, One Cell at a Time
- (2009) Tanja Woyke et al. PLoS One
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
- (2008) Rudolf Amann et al. NATURE REVIEWS MICROBIOLOGY
- Microbiology in the post-genomic era
- (2008) Duccio Medini et al. NATURE REVIEWS MICROBIOLOGY
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started