Metagenomic Functional Potential Predicts Degradation Rates of a Model Organophosphorus Xenobiotic in Pesticide Contaminated Soils

Isolation and Molecular Characterization of Novel Chlorpyrifos and 3,5,6-trichloro-2-pyridinol-degrading Bacteria from Sugarcane Farm Soils

(2017) Smriti Rayu et al.   Frontiers in Microbiology

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

(2015) Genivaldo Gueiros Z. Silva et al.   BIOINFORMATICS

Metagenomics for the discovery of pollutant degrading enzymes

(2015) Lisa Ufarté et al.   BIOTECHNOLOGY ADVANCES

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef

(2014) Jessica Tout et al.   MICROBIAL ECOLOGY

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

(2014) Genivaldo Gueiros Z. Silva et al.   PeerJ

Siderophores in environmental research: roles and applications

(2014) E. Ahmed et al.   Microbial Biotechnology

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Determining the Metabolic Footprints of Hydrocarbon Degradation Using Multivariate Analysis

(2013) Renee. J. Smith et al.   PLoS One

Assessment of microbial community function and structure in soil microcosms exposed to glyphosate

(2012) María C. Zabaloy et al.   APPLIED SOIL ECOLOGY

Cleaning contaminated environment: a growing challenge

(2012) Brajesh K. Singh et al.   BIODEGRADATION

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems

(2011) Renee J. Smith et al.   ENVIRONMENTAL MICROBIOLOGY

Indicators of pesticide contamination: Soil enzyme compared to functional diversity of bacterial communities via Biolog® Ecoplates

(2011) Carine Floch et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Measuring the effects of pesticides on bacterial communities in soil: A critical review

(2011) Gwenaël Imfeld et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat

(2011) Ian Hewson et al.   LIMNOLOGY AND OCEANOGRAPHY

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Microbial communities to mitigate contamination of PAHs in soil—possibilities and challenges: a review

(2010) F. Fernández-Luqueño et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

(2010) Christopher L Hemme et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The phage-driven microbial loop in petroleum bioremediation

(2010) Eugene Rosenberg et al.   Microbial Biotechnology

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial phosphate metabolism and its application to phosphorus recovery and industrial bioprocesses

(2009) Ryuichi Hirota et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A safe operating space for humanity

(2009) Johan Rockström et al.   NATURE

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

Systems biology approaches to bioremediation

(2008) Víctor de Lorenzo   CURRENT OPINION IN BIOTECHNOLOGY

The degradation of the herbicide bromoxynil and its impact on bacterial diversity in a top soil

(2008) J. Baxter et al.   JOURNAL OF APPLIED MICROBIOLOGY

Pseudomonas aeruginosa as a model microorganism for investigation of chemotactic behaviors in ecosystem

(2008) Junichi Kato et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Effect of cypermethrin insecticide on the microbial community in cucumber phyllosphere

(2008) Baoguo ZHANG et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Molecular cloning and characterization of a novel pyrethroid-hydrolyzing esterase originating from the Metagenome

(2008) Gang Li et al.   Microbial Cell Factories

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

Metagenomics

(2008) Philip Hugenholtz et al.   NATURE

Organophosphorus-degrading bacteria: ecology and industrial applications

(2008) Brajesh K. Singh   NATURE REVIEWS MICROBIOLOGY

Impacts of methamidophos on the biochemical, catabolic, and genetic characteristics of soil microbial communities

(2007) Meng-Cheng Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY