Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil

Stable and radiocarbon isotopic composition of dissolved organic matter in the Gulf of Mexico

(2017) B. D. Walker et al.   GEOPHYSICAL RESEARCH LETTERS

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

(2017) K M Handley et al.   ISME Journal

Microbial enzymatic activity and secondary production in sediments affected by the sedimentation pulse following the Deepwater Horizon oil spill

(2016) Kai Ziervogel et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Distributions and accumulation rates of polycyclic aromatic hydrocarbons in the northern Gulf of Mexico sediments

(2016) Puspa L. Adhikari et al.   ENVIRONMENTAL POLLUTION

Woeseia oceani gen. nov., sp. nov., a chemoheterotrophic member of the order Chromatiales, and proposal of Woeseiaceae fam. nov.

(2016) Zong-Jun Du et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction

(2016) Kiley W Seitz et al.   ISME Journal

NC10 bacteria in marine oxygen minimum zones

(2016) Cory C Padilla et al.   ISME Journal

The tarballs on Texas beaches following the 2014 Texas City “Y” Spill: Modeling, chemical, and microbiological studies

(2016) Hernando P. Bacosa et al.   MARINE POLLUTION BULLETIN

Macondo oil in deep-sea sediments: Part 2 — Distribution and distinction from background and natural oil seeps

(2016) Scott A. Stout et al.   MARINE POLLUTION BULLETIN

Macondo oil in deep-sea sediments: Part 1 – sub-sea weathering of oil deposited on the seafloor

(2016) Scott A. Stout et al.   MARINE POLLUTION BULLETIN

Sustained deposition of contaminants from theDeepwater Horizonspill

(2016) Beizhan Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill

(2016) Nina Dombrowski et al.   Nature Microbiology

Microbial Community Composition, Functions, and Activities in the Gulf of Mexico 1 Year after the Deepwater Horizon Accident

(2015) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Polycyclic aromatic hydrocarbons (PAHs) biodegradation potential and diversity of microbial consortia enriched from tsunami sediments in Miyagi, Japan

(2015) Hernando Pactao Bacosa et al.   JOURNAL OF HAZARDOUS MATERIALS

Differentiating the roles of photooxidation and biodegradation in the weathering of Light Louisiana Sweet crude oil in surface water from the Deepwater Horizon site

(2015) Hernando P. Bacosa et al.   MARINE POLLUTION BULLETIN

Chemical dispersants can suppress the activity of natural oil-degrading microorganisms

(2015) Sara Kleindienst et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural Sunlight Shapes Crude Oil-Degrading Bacterial Communities in Northern Gulf of Mexico Surface Waters

(2015) Hernando P. Bacosa et al.   Frontiers in Microbiology

Hydrocarbons in Deep-Sea Sediments following the 2010 Deepwater Horizon Blowout in the Northeast Gulf of Mexico

(2015) Isabel C. Romero et al.   PLoS One

Recalcitrance and Degradation of Petroleum Biomarkers upon Abiotic and Biotic Natural Weathering of Deepwater Horizon Oil

(2014) Christoph Aeppli et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Using Natural Abundance Radiocarbon To Trace the Flux of Petrocarbon to the Seafloor Following the Deepwater Horizon Oil Spill

(2014) Jeffrey Chanton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

(2014) Olivia U Mason et al.   ISME Journal

Fallout plume of submerged oil fromDeepwater Horizon

(2014) David L. Valentine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill

(2014) Olivia U. Mason et al.   Frontiers in Microbiology

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP

(2013) Tony Gutierrez et al.   ISME Journal

Degradation potential and microbial community structure of heavy oil-enriched microbial consortia from mangrove sediments in Okinawa, Japan

(2013) Hernando P. Bacosa et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

Interactions between Zooplankton and Crude Oil: Toxic Effects and Bioaccumulation of Polycyclic Aromatic Hydrocarbons

(2013) Rodrigo Almeda et al.   PLoS One

Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

(2013) Nikole E. Kimes et al.   Frontiers in Microbiology

Evaluating bacterial community structures in oil collected from the sea surface and sediment in the northern Gulf of Mexico after theDeepwater Horizonoil spill

(2013) Zhanfei Liu et al.   MicrobiologyOpen

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

The weathering of oil after theDeepwater Horizonoil spill: insights from the chemical composition of the oil from the sea surface, salt marshes and sediments

(2012) Zhanfei Liu et al.   Environmental Research Letters

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobic Oxidation of Methane in Sediments of Lake Constance, an Oligotrophic Freshwater Lake

(2011) Jörg S. Deutzmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge

(2011) Francisca A. Luesken et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacteriumCandidatus‘Methylomirabilis oxyfera’

(2011) Ming L. Wu et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History

(2011) Ronald M. Atlas et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

(2011) Zhenmei Lu et al.   ISME Journal

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

(2010) Beth N. Orcutt et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium

(2010) Hernando Bacosa et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Preferential utilization of petroleum oil hydrocarbon components by microbial consortia reflects degradation pattern in aliphatic–aromatic hydrocarbon binary mixtures

(2010) Hernando Pactao Bacosa et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum

(2009) K. F. Ettwig et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY