Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates

How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?

(2018) Nigel E. Stork   Annual Review of Entomology

Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites

(2018) Rob W. Briddon et al.   ARCHIVES OF VIROLOGY

Smacoviridae: a new family of animal-associated single-stranded DNA viruses

(2018) Arvind Varsani et al.   ARCHIVES OF VIROLOGY

Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing

(2018) Karyna Rosario et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Corallivory and the microbial debacle in two branching scleractinians

(2018) Yvan Bettarel et al.   ISME Journal

Insights into circovirus host range from the genomic fossil record

(2018) Tristan P.W. Dennis et al.   JOURNAL OF VIROLOGY

The evolutionary history of vertebrate RNA viruses

(2018) Mang Shi et al.   NATURE

Meta-transcriptomics and the evolutionary biology of RNA viruses

(2018) Mang Shi et al.   VIRUS RESEARCH

Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

(2018) Valerian V. Dolja et al.   VIRUS RESEARCH

The evolution, distribution and diversity of endogenous circoviral elements in vertebrate genomes

(2018) Tristan P.W. Dennis et al.   VIRUS RESEARCH

Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses

(2018) Darius Kazlauskas et al.   Viruses-Basel

Molecular detection of novel circoviruses in ticks in northeastern China

(2018) Bo Wang et al.   Ticks and Tick-Borne Diseases

A comprehensive and quantitative exploration of thousands of viral genomes

(2018) Gita Mahmoudabadi et al.   eLife

Metavirome Sequencing of the Termite Gut Reveals the Presence of an Unexplored Bacteriophage Community

(2018) Chinmay V. Tikhe et al.   Frontiers in Microbiology

Identification of Novel Viruses in Amblyomma americanum , Dermacentor variabilis , and Ixodes scapularis Ticks

(2018) Rafal Tokarz et al.   mSphere

Case-Control Comparison of Enteric Viromes in Captive Rhesus Macaques with Acute or Idiopathic Chronic Diarrhea

(2017) Beatrix Kapusinszky et al.   JOURNAL OF VIROLOGY

WormBase ParaSite − a comprehensive resource for helminth genomics

(2017) Kevin L. Howe et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)

(2017) Elliot J Lefkowitz et al.   NUCLEIC ACIDS RESEARCH

Distinctive fungal communities in an obligate African ant-plant mutualism

(2017) Christopher C. M. Baker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary history of ssDNA bacilladnaviruses features horizontal acquisition of the capsid gene from ssRNA nodaviruses

(2017) Darius Kazlauskas et al.   VIROLOGY

Identification of an anellovirus and genomoviruses in ixodid ticks

(2017) Kara Waits et al.   VIRUS GENES

The Incredible Journey of Begomoviruses in Their Whitefly Vector

(2017) Henryk Czosnek et al.   Viruses-Basel

Distribution and Inferred Evolutionary Characteristics of a Chimeric ssDNA Virus Associated with Intertidal Marine Isopods

(2017) Kalia Bistolas et al.   Viruses-Basel

Viral gut metagenomics of sympatric wild and domestic canids, and monitoring of viruses: Insights from an endangered wolf population

(2017) Nádia Conceição-Neto et al.   Ecology and Evolution

Predicting virus emergence amid evolutionary noise

(2017) Jemma L. Geoghegan et al.   Open Biology

DNA-barcoding of forensically important blow flies (Diptera: Calliphoridae) in the Caribbean Region

(2017) Sohath Z. Yusseff-Vanegas et al.   PeerJ

Parasite Microbiome Project: Systematic Investigation of Microbiome Dynamics within and across Parasite-Host Interactions

(2017) Nolwenn M. Dheilly et al.   mSystems

Genomoviridae: a new family of widespread single-stranded DNA viruses

(2016) Mart Krupovic et al.   ARCHIVES OF VIROLOGY

Circular replication-associated protein encoding DNA viruses identified in the faecal matter of various animals in New Zealand

(2016) Olivia Steel et al.   INFECTION GENETICS AND EVOLUTION

Cycloviruses, gemycircularviruses and other novel replication-associated protein encoding circular viruses in Pacific flying fox ( Pteropus tonganus ) faeces

(2016) Maketalena F. Male et al.   INFECTION GENETICS AND EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Fungal DNA virus infects a mycophagous insect and utilizes it as a transmission vector

(2016) Si Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Begomovirus-Associated Satellite DNA Diversity Captured Through Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae)

(2016) Karyna Rosario et al.   Viruses-Basel

Plant Virus–Insect Vector Interactions: Current and Potential Future Research Directions

(2016) Ralf Dietzgen et al.   Viruses-Basel

The Ancient Evolutionary History of Polyomaviruses

(2016) Christopher B. Buck et al.   PLoS Pathogens

Single-stranded DNA viruses employ a variety of mechanisms for integration into host genomes

(2015) Mart Krupovic et al.   Annals of the New York Academy of Sciences

Distinct Circular Single-Stranded DNA Viruses Exist in Different Soil Types

(2015) Brian Reavy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Revision of Begomovirus taxonomy based on pairwise sequence comparisons

(2015) Judith K. Brown et al.   ARCHIVES OF VIROLOGY

Multiple Layers of Chimerism in a Single-Stranded DNA Virus Discovered by Deep Sequencing

(2015) M. Krupovic et al.   Genome Biology and Evolution

Diverse small circular DNA viruses circulating amongst estuarine molluscs

(2015) Anisha Dayaram et al.   INFECTION GENETICS AND EVOLUTION

Identification of diverse circular single-stranded DNA viruses in adult dragonflies and damselflies (Insecta: Odonata) of Arizona and Oklahoma, USA

(2015) Anisha Dayaram et al.   INFECTION GENETICS AND EVOLUTION

Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond

(2015) Simona Kraberger et al.   INFECTION GENETICS AND EVOLUTION

Circulative Nonpropagative Aphid Transmission of Nanoviruses: an Oversimplified View

(2015) Anne Sicard et al.   JOURNAL OF VIROLOGY

Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses

(2015) Mang Shi et al.   JOURNAL OF VIROLOGY

Origins and evolution of viruses of eukaryotes: The ultimate modularity

(2015) Eugene V. Koonin et al.   VIROLOGY

Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds

(2015) Karyna Rosario et al.   Viruses-Basel

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins

(2015) Karyna Rosario et al.   Frontiers in Microbiology

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

(2014) Arvind Varsani et al.   ARCHIVES OF VIROLOGY

Revisiting the classification of curtoviruses based on genome-wide pairwise identity

(2014) Arvind Varsani et al.   ARCHIVES OF VIROLOGY

Faecal virome of cats in an animal shelter

(2014) W. Zhang et al.   JOURNAL OF GENERAL VIROLOGY

Virus World as an Evolutionary Network of Viruses and Capsidless Selfish Elements

(2014) Eugene V. Koonin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

(2014) Brejnev Muhizi Muhire et al.   PLoS One

Novel cyclovirus discovered in the Florida woods cockroach Eurycotis floridana (Walker)

(2013) Marco Padilla-Rodriguez et al.   ARCHIVES OF VIROLOGY

Comparative metagenomics: natural populations of induced prophages demonstrate highly unique, lower diversity viral sequences

(2013) Lauren D. McDaniel et al.   ENVIRONMENTAL MICROBIOLOGY

Previously unknown and highly divergent ssDNA viruses populate the oceans

(2013) Jessica M Labonté et al.   ISME Journal

High global diversity of cycloviruses amongst dragonflies

(2013) A. Dayaram et al.   JOURNAL OF GENERAL VIROLOGY

Investigation of viruses in Diporeia spp. from the Laurentian Great Lakes and Owasco Lake as potential stressors of declining populations

(2013) Ian Hewson et al.   JOURNAL OF GREAT LAKES RESEARCH

Multiple Forms of Vector Manipulation by a Plant-Infecting Virus: Bemisia tabaci and Tomato Yellow Leaf Curl Virus

(2013) B. Liu et al.   JOURNAL OF VIROLOGY

Metagenomic identification, seasonal dynamics, and potential transmission mechanisms of aDaphnia-associated single-stranded DNA virus in two temperate lakes

(2013) Ian Hewson et al.   LIMNOLOGY AND OCEANOGRAPHY

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Molecular and microscopic evidence of viruses in marine copepods

(2013) Darren S. Dunlap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses

(2013) Simon Roux et al.   Nature Communications

Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses

(2013) Mart Krupovic   Current Opinion in Virology

Prevalence, Environmental Loading, and Molecular Characterization of Cryptosporidium and Giardia Isolates from Domestic and Wild Animals along the Central California Coast

(2012) Stori C. Oates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

(2012) Karyna Rosario et al.   ARCHIVES OF VIROLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses

(2012) Geoffrey S Diemer et al.   Biology Direct

Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta)

(2012) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Tropism, compartmentalization and retention of banana bunchy top virus (Nanoviridae) in the aphid vector Pentalonia nigronervosa

(2012) S. Watanabe et al.   JOURNAL OF GENERAL VIROLOGY

Metagenomic Characterization of Airborne Viral DNA Diversity in the Near-Surface Atmosphere

(2012) T. W. Whon et al.   JOURNAL OF VIROLOGY

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Reevaluating the Arthropod Tree of Life

(2011) Gonzalo Giribet et al.   Annual Review of Entomology

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

(2011) Kyoung-Ho Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Widespread Horizontal Gene Transfer from Circular Single-stranded DNA Viruses to Eukaryotic Genomes

(2011) Huiquan Liu et al.   BMC EVOLUTIONARY BIOLOGY

Exploring the Diversity of Plant DNA Viruses and Their Satellites Using Vector-Enabled Metagenomics on Whiteflies

(2011) Terry Fei Fan Ng et al.   PLoS One

Evolutionary Time-Scale of the Begomoviruses: Evidence from Integrated Sequences in the Nicotiana Genome

(2011) Pierre Lefeuvre et al.   PLoS One

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

Recombination in Eukaryotic Single Stranded DNA Viruses

(2011) Darren P. Martin et al.   Viruses-Basel

The Fecal Viral Flora of Wild Rodents

(2011) Tung G. Phan et al.   PLoS Pathogens

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

(2010) Ben C Stöver et al.   BMC BIOINFORMATICS

Sequences from Ancestral Single-Stranded DNA Viruses in Vertebrate Genomes: the Parvoviridae and Circoviridae Are More than 40 to 50 Million Years Old

(2010) V. A. Belyi et al.   JOURNAL OF VIROLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

(2010) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

(2009) S. Duffy et al.   JOURNAL OF GENERAL VIROLOGY

Diverse circovirus-like genome architectures revealed by environmental metagenomics

(2009) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

(2009) C. Firth et al.   JOURNAL OF VIROLOGY

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

Insect Vector Interactions with Persistently Transmitted Viruses

(2008) Saskia A. Hogenhout et al.   Annual Review of Phytopathology

Amplification of Uncultured Single-Stranded DNA Viruses from Rice Paddy Soil

(2008) K.-H. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses

(2008) P. Lefeuvre et al.   JOURNAL OF VIROLOGY

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS