Single-stranded DNA viruses employ a variety of mechanisms for integration into host genomes

Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses

(2014) Mart Krupovic et al.   Biology Direct

Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes

(2014) Kira S. Makarova et al.   EXTREMOPHILES

Remarkable Diversity of Endogenous Viruses in a Crustacean Genome

(2014) Julien Thézé et al.   Genome Biology and Evolution

Linking Host Prokaryotic Physiology to Viral Lifestyle Dynamics in a Temperate Freshwater Lake (Lake Pavin, France)

(2014) S. Palesse et al.   MICROBIAL ECOLOGY

Virus World as an Evolutionary Network of Viruses and Capsidless Selfish Elements

(2014) Eugene V. Koonin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes

(2014) C. Gilbert et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses

(2014) Mart Krupovic et al.   Scientific Reports

The Wonderful World of Archaeal Viruses

(2013) David Prangishvili   Annual Review of Microbiology

Novel ssDNA viruses discovered in yellow-crowned parakeet (Cyanoramphus auriceps) nesting material

(2013) Alyssa Sikorski et al.   ARCHIVES OF VIROLOGY

Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybee-associated bacterium

(2013) Wen-Sui Lo et al.   BMC GENOMICS

Large serine recombinase domain structure and attachment site binding

(2013) Gregory D. Van Duyne et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Previously unknown and highly divergent ssDNA viruses populate the oceans

(2013) Jessica M Labonté et al.   ISME Journal

Novel ssDNA virus recovered from estuarine Mollusc (Amphibola crenata) whose replication associated protein (Rep) shares similarities with Rep-like sequences of bacterial origin

(2013) A. Dayaram et al.   JOURNAL OF GENERAL VIROLOGY

Mechanisms for RNA Capture by ssDNA Viruses: Grand Theft RNA

(2013) Kenneth Stedman   JOURNAL OF MOLECULAR EVOLUTION

High-Throughput Sequencing Reveals Principles of Adeno-Associated Virus Serotype 2 Integration

(2013) T. Janovitz et al.   JOURNAL OF VIROLOGY

Breaking and joining single-stranded DNA: the HUH endonuclease superfamily

(2013) Michael Chandler et al.   NATURE REVIEWS MICROBIOLOGY

Insights into Dynamics of Mobile Genetic Elements in Hyperthermophilic Environments from Five New Thermococcus Plasmids

(2013) Mart Krupovic et al.   PLoS One

Virome Profiling of Bats from Myanmar by Metagenomic Analysis of Tissue Samples Reveals More Novel Mammalian Viruses

(2013) Biao He et al.   PLoS One

Twelve previously unknown phage genera are ubiquitous in global oceans

(2013) K. Holmfeldt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses

(2013) Simon Roux et al.   Nature Communications

Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses

(2013) Mart Krupovic   Current Opinion in Virology

Recombination between RNA viruses and plasmids might have played a central role in the origin and evolution of small DNA viruses

(2012) Mart Krupovic   BIOESSAYS

A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses

(2012) Geoffrey S Diemer et al.   Biology Direct

Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta)

(2012) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Site-specific recombination systems in filamentous phages

(2012) Ahmed Askora et al.   MOLECULAR GENETICS AND GENOMICS

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Related haloarchaeal pleomorphic viruses contain different genome types

(2012) Ana Senčilo et al.   NUCLEIC ACIDS RESEARCH

Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads

(2012) Simon Roux et al.   PLoS One

Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome

(2012) T. Mochizuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative mobile elements exploiting Xer recombination

(2012) Bhabatosh Das et al.   TRENDS IN MICROBIOLOGY

Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces

(2011) Min-Soo Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Widespread Horizontal Gene Transfer from Circular Single-stranded DNA Viruses to Eukaryotic Genomes

(2011) Huiquan Liu et al.   BMC EVOLUTIONARY BIOLOGY

First detection and analysis of a fish circovirus

(2011) M. Lorincz et al.   JOURNAL OF GENERAL VIROLOGY

Widespread Endogenization of Densoviruses and Parvoviruses in Animal and Human Genomes

(2011) H. Liu et al.   JOURNAL OF VIROLOGY

Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere

(2011) M. Krupovic et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Evolutionary Time-Scale of the Begomoviruses: Evidence from Integrated Sequences in the Nicotiana Genome

(2011) Pierre Lefeuvre et al.   PLoS One

Microviridae Goes Temperate: Microvirus-Related Proviruses Reside in the Genomes of Bacteroidetes

(2011) Mart Krupovic et al.   PLoS One

VGJ  integration and excision mechanisms contribute to the genetic diversity of Vibrio cholerae epidemic strains

(2011) B. Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Partial Chromosome Sequence of Spiroplasma citri Reveals Extensive Viral Invasion and Important Gene Decay

(2010) P. Carle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans

(2010) Alison Burgess Hickman et al.   EMBO JOURNAL

Resolvase-like serine recombinase mediates integration/excision in the bacteriophage ϕRSM

(2010) Ahmed Askora et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Discovery and Characterization of Mammalian Endogenous Parvoviruses

(2010) A. Kapoor et al.   JOURNAL OF VIROLOGY

High Variability and Rapid Evolution of a Nanovirus

(2010) I. Grigoras et al.   JOURNAL OF VIROLOGY

Order to the Viral Universe

(2010) M. Krupovic et al.   JOURNAL OF VIROLOGY

Sequences from Ancestral Single-Stranded DNA Viruses in Vertebrate Genomes: the Parvoviridae and Circoviridae Are More than 40 to 50 Million Years Old

(2010) V. A. Belyi et al.   JOURNAL OF VIROLOGY

Molecular keys of the tropism of integration of the cholera toxin phage

(2010) B. Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

(2010) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

Geminiviruses: a tale of a plasmid becoming a virus

(2009) Mart Krupovic et al.   BMC EVOLUTIONARY BIOLOGY

Site-Specific Insertion of IS492 in Pseudoalteromonas atlantica

(2009) B. P. Higgins et al.   JOURNAL OF BACTERIOLOGY

Dating the origins of the maize-adapted strain of maize streak virus, MSV-A

(2009) G. W. Harkins et al.   JOURNAL OF GENERAL VIROLOGY

Novel circular DNA viruses in stool samples of wild-living chimpanzees

(2009) O. Blinkova et al.   JOURNAL OF GENERAL VIROLOGY

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

(2009) C. Firth et al.   JOURNAL OF VIROLOGY

An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope

(2009) Maija K. Pietilä et al.   MOLECULAR MICROBIOLOGY

Site-specific integration of adeno-associated virus involves partial duplication of the target locus

(2009) E. Henckaerts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

(2009) Gordon W Harkins et al.   Virology Journal

A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes

(2009) Diego Cortez et al.   GENOME BIOLOGY

Adeno-associated virus integration: virus versus vector

(2008) R H Smith   GENE THERAPY

Experimental observations of rapid Maize streak virus evolution reveal a strand-specific nucleotide substitution bias

(2008) Eric van der Walt et al.   Virology Journal

Sub-terminal Sequences Modulating IS30 Transposition in Vivo and in Vitro

(2007) Mónika Szabó et al.   JOURNAL OF MOLECULAR BIOLOGY