A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses

RNA-RNA Recombination in Plant Virus Replication and Evolution

(2011) Joanna Sztuba-Solińska et al.   Annual Review of Phytopathology

Recombination hotspots and host susceptibility modulate the adaptive value of recombination during maize streak virus evolution

(2011) Aderito L. Monjane et al.   BMC EVOLUTIONARY BIOLOGY

Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere

(2011) M. Krupovic et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees

(2011) Dongying Wu et al.   PLoS One

A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules

(2011) Gipsi Lima-Mendez et al.   RESEARCH IN MICROBIOLOGY

The nucleotide sequence and genome organization of Plasmopara halstedii virus

(2011) Marion Heller-Dohmen et al.   Virology Journal

Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation

(2011) Jungan Park et al.   VIRUS RESEARCH

Non-Retroviral Fossils in Vertebrate Genomes

(2011) Masayuki Horie et al.   Viruses-Basel

Common origins and host-dependent diversity of plant and animal viromes

(2011) Valerian V Dolja et al.   Current Opinion in Virology

Widespread Endogenization of Genome Sequences of Non-Retroviral RNA Viruses into Plant Genomes

(2011) Sotaro Chiba et al.   PLoS Pathogens

Taming of the shrewd: novel eukaryotic genes from RNA viruses

(2010) Eugene V Koonin   BMC BIOLOGY

Widespread Horizontal Gene Transfer from Double-Stranded RNA Viruses to Eukaryotic Nuclear Genomes

(2010) H. Liu et al.   JOURNAL OF VIROLOGY

CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles

(2010) Morten Nielsen et al.   NUCLEIC ACIDS RESEARCH

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

(2010) Matthew R. Henn et al.   PLoS One

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

The evolution of novel fungal genes from non-retroviral RNA viruses

(2009) Derek J Taylor et al.   BMC BIOLOGY

Geminiviruses: a tale of a plasmid becoming a virus

(2009) Mart Krupovic et al.   BMC EVOLUTIONARY BIOLOGY

Diverse circovirus-like genome architectures revealed by environmental metagenomics

(2009) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Viruses are essential agents within the roots and stem of the tree of life

(2009) Luis P. Villarreal et al.   JOURNAL OF THEORETICAL BIOLOGY

Identification of Potential Recombination Breakpoints in Human Parechoviruses

(2009) J. Zoll et al.   JOURNAL OF VIROLOGY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Linear group II intron RNAs can retrohome in eukaryotes and may use nonhomologous end-joining for cDNA ligation

(2009) F. Zhuang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional viral metagenomics and the next generation of molecular tools

(2009) Thomas Schoenfeld et al.   TRENDS IN MICROBIOLOGY

New dimensions of the virus world discovered through metagenomics

(2009) David M. Kristensen et al.   TRENDS IN MICROBIOLOGY

Replication of porcine circoviruses

(2009) Florence Faurez et al.   Virology Journal

Role of the DxxDxD motif in the assembly and stability of betanodavirus particles

(2008) Yi-Min Wu et al.   ARCHIVES OF VIROLOGY

Molecular phylogeny: reconstructing the forest

(2008) Philippe Lopez et al.   COMPTES RENDUS BIOLOGIES

Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses

(2008) P. Lefeuvre et al.   JOURNAL OF VIROLOGY

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

(2008) Eugene V. Koonin et al.   NATURE REVIEWS MICROBIOLOGY