Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses

Smacoviridae: a new family of animal-associated single-stranded DNA viruses

(2018) Arvind Varsani et al.   ARCHIVES OF VIROLOGY

Plasma virome of cattle from forest region revealed diverse small circular ssDNA viral genomes

(2018) Hao Wang et al.   Virology Journal

Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan

(2018) Mitsuhiro Yoshida et al.   Frontiers in Microbiology

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

Multiple origins of viral capsid proteins from cellular ancestors

(2017) Mart Krupovic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary history of ssDNA bacilladnaviruses features horizontal acquisition of the capsid gene from ssRNA nodaviruses

(2017) Darius Kazlauskas et al.   VIROLOGY

Evolutionary ecology of virus emergence

(2016) John J. Dennehy   Annals of the New York Academy of Sciences

Genomoviridae: a new family of widespread single-stranded DNA viruses

(2016) Mart Krupovic et al.   ARCHIVES OF VIROLOGY

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

(2016) Tung Gia Phan et al.   ARCHIVES OF VIROLOGY

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem

(2016) Anisha Dayaram et al.   INFECTION GENETICS AND EVOLUTION

The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing

(2016) Jaime Iranzo et al.   mBio

Multiple Layers of Chimerism in a Single-Stranded DNA Virus Discovered by Deep Sequencing

(2015) M. Krupovic et al.   Genome Biology and Evolution

Diverse small circular DNA viruses circulating amongst estuarine molluscs

(2015) Anisha Dayaram et al.   INFECTION GENETICS AND EVOLUTION

Origins and evolution of viruses of eukaryotes: The ultimate modularity

(2015) Eugene V. Koonin et al.   VIROLOGY

Recombination as a motor of host switches and virus emergence: geminiviruses as case studies

(2015) Pierre Lefeuvre et al.   Current Opinion in Virology

Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins

(2015) Karyna Rosario et al.   Frontiers in Microbiology

Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes

(2015) Kenneth M. Stedman   Annual Review of Virology

Identification of several clades of novel single-stranded circular DNA viruses with conserved stem-loop structures in pig feces

(2014) Andrew K. Cheung et al.   ARCHIVES OF VIROLOGY

Extensive Recombination-Induced Disruption of Genetic Interactions Is Highly Deleterious but Can Be Partially Reversed by Small Numbers of Secondary Recombination Events

(2014) Adérito L. Monjane et al.   JOURNAL OF VIROLOGY

Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses

(2014) Mart Krupovic et al.   Scientific Reports

Evidence of Pervasive Biologically Functional Secondary Structures within the Genomes of Eukaryotic Single-Stranded DNA Viruses

(2013) B. M. Muhire et al.   JOURNAL OF VIROLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Breaking and joining single-stranded DNA: the HUH endonuclease superfamily

(2013) Michael Chandler et al.   NATURE REVIEWS MICROBIOLOGY

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses

(2013) Simon Roux et al.   Nature Communications

Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses

(2013) Mart Krupovic   Current Opinion in Virology

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

(2012) Karyna Rosario et al.   ARCHIVES OF VIROLOGY

A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses

(2012) Geoffrey S Diemer et al.   Biology Direct

Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta)

(2012) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Why do RNA viruses recombine?

(2011) Etienne Simon-Loriere et al.   NATURE REVIEWS MICROBIOLOGY

Recombination in Eukaryotic Single Stranded DNA Viruses

(2011) Darren P. Martin et al.   Viruses-Basel

Exploring the viral world through metagenomics

(2011) Karyna Rosario et al.   Current Opinion in Virology

Complex Recombination Patterns Arising during Geminivirus Coinfections Preserve and Demarcate Biologically Important Intra-Genome Interaction Networks

(2011) Darren P. Martin et al.   PLoS Pathogens

High Variability and Rapid Evolution of a Nanovirus

(2010) I. Grigoras et al.   JOURNAL OF VIROLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Novel circular DNA viruses in stool samples of wild-living chimpanzees

(2009) O. Blinkova et al.   JOURNAL OF GENERAL VIROLOGY

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

(2009) S. Duffy et al.   JOURNAL OF GENERAL VIROLOGY

Diverse circovirus-like genome architectures revealed by environmental metagenomics

(2009) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

(2009) C. Firth et al.   JOURNAL OF VIROLOGY

Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

(2009) Gordon W Harkins et al.   Virology Journal

Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses

(2008) P. Lefeuvre et al.   JOURNAL OF VIROLOGY