- Home
- Publications
- Publication Search
- Publication Details
Title
The transcriptional landscape of polyploid wheat
Authors
Keywords
-
Journal
SCIENCE
Volume 361, Issue 6403, Pages eaar6089
Publisher
American Association for the Advancement of Science (AAAS)
Online
2018-08-21
DOI
10.1126/science.aar6089
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome
- (2018) Hainan Zhao et al. PLANT PHYSIOLOGY
- Shifting the limits in wheat research and breeding using a fully annotated reference genome
- (2018) et al. SCIENCE
- uORF-mediated translation allows engineered plant disease resistance without fitness costs
- (2017) Guoyong Xu et al. NATURE
- The evolutionary significance of polyploidy
- (2017) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower
- (2017) Patrick P. Edger et al. PLANT CELL
- Uncovering hidden variation in polyploid wheat
- (2017) Ksenia V. Krasileva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CerealsDB 3.0: expansion of resources and data integration
- (2016) Paul A. Wilkinson et al. BMC BIOINFORMATICS
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
- (2016) Philippa Borrill et al. PLANT PHYSIOLOGY
- On the origin and evolutionary consequences of gene body DNA methylation
- (2016) Adam J. Bewick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Integration of omic networks in a developmental atlas of maize
- (2016) J. W. Walley et al. SCIENCE
- Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA
- (2016) Yi Zhang et al. Nature Communications
- Arabidopsis EF-Tu receptor enhances bacterial disease resistance in transgenic wheat
- (2015) Henk-jan Schoonbeek et al. NEW PHYTOLOGIST
- Genomics as the key to unlocking the polyploid potential of wheat
- (2015) Philippa Borrill et al. NEW PHYTOLOGIST
- PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants
- (2015) Chi-Nga Chow et al. NUCLEIC ACIDS RESEARCH
- The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity
- (2015) Lingfei Hu et al. PLANT PHYSIOLOGY
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- The fate of recent duplicated genes following a fourth-round whole genome duplication in a tetraploid fish, common carp (Cyprinus carpio)
- (2015) Jiong-Tang Li et al. Scientific Reports
- FactoMineR: AnRPackage for Multivariate Analysis
- (2015) Sébastien Lê et al. Journal of Statistical Software
- MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice
- (2015) Chunyan Yu et al. PLoS One
- Comparative Transcriptome Analysis of Shoots and Roots of TNG67 and TCN1 Rice Seedlings under Cold Stress and Following Subsequent Recovery: Insights into Metabolic Pathways, Phytohormones, and Transcription Factors
- (2015) Yun-Wei Yang et al. PLoS One
- Doubling down on genomes: Polyploidy and crop plants
- (2014) Simon Renny-Byfield et al. AMERICAN JOURNAL OF BOTANY
- genomation: a toolkit to summarize, annotate and visualize genomic intervals
- (2014) A. Akalin et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
- (2014) Lindsey J Leach et al. BMC GENOMICS
- Ancient Gene Duplicates in Gossypium (Cotton) Exhibit Near-Complete Expression Divergence
- (2014) Simon Renny-Byfield et al. Genome Biology and Evolution
- MADS-Box Transcription Factor AGL21 Regulates Lateral Root Development and Responds to Multiple External and Physiological Signals
- (2014) Lin-Hui Yu et al. Molecular Plant
- Genome interplay in the grain transcriptome of hexaploid bread wheat
- (2014) M. Pfeifer et al. SCIENCE
- Functional characterization of GPC-1 genes in hexaploid wheat
- (2013) Raz Avni et al. PLANTA
- The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
- (2013) Siyi Guo et al. Nature Communications
- The HSF-like Transcription Factor TBF1 Is a Major Molecular Switch for Plant Growth-to-Defense Transition
- (2012) Karolina M. Pajerowska-Mukhtar et al. CURRENT BIOLOGY
- Homoeolog expression bias and expression level dominance in allopolyploid cotton
- (2012) M-J Yoo et al. HEREDITY
- Genomic asymmetry in allopolyploid plants: wheat as a model
- (2012) M. Feldman et al. JOURNAL OF EXPERIMENTAL BOTANY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Homoeolog expression bias and expression level dominance in allopolyploids
- (2012) C. E. Grover et al. NEW PHYTOLOGIST
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- The fate of duplicated genes in a polyploid plant genome
- (2012) Anne Roulin et al. PLANT JOURNAL
- Heat Shock Factor HsfB1 Primes Gene Transcription and Systemic Acquired Resistance in Arabidopsis
- (2012) T. Pick et al. PLANT PHYSIOLOGY
- Gene duplication as a mechanism of genomic adaptation to a changing environment
- (2012) F. A. Kondrashov PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Polyploidy in fungi: evolution after whole-genome duplication
- (2012) W. Albertin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
- (2011) Sebastian Proost et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis HsfB1 and HsfB2b Act as Repressors of the Expression of Heat-Inducible Hsfs But Positively Regulate the Acquired Thermotolerance
- (2011) M. Ikeda et al. PLANT PHYSIOLOGY
- BioRuby: bioinformatics software for the Ruby programming language
- (2010) N. Goto et al. BIOINFORMATICS
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity
- (2010) Daniel Lang et al. Genome Biology and Evolution
- Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes
- (2010) Satoko Matsukura et al. MOLECULAR GENETICS AND GENOMICS
- Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids
- (2010) Véronique Chagué et al. NEW PHYTOLOGIST
- Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus
- (2010) Richard J. A. Buggs et al. NEW PHYTOLOGIST
- Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
- (2010) Vân Anh Huynh-Thu et al. PLoS One
- Heat Shock Factors HsfB1 and HsfB2b Are Involved in the Regulation of Pdf1.2 Expression and Pathogen Resistance in Arabidopsis
- (2009) Mukesh Kumar et al. Molecular Plant
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses
- (2008) Yuanqing Jiang et al. PLANT MOLECULAR BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More