BioRuby: bioinformatics software for the Ruby programming language

miRMaid: a unified programming interface for microRNA data resources

(2010) Anders Jacobsen et al.   BMC BIOINFORMATICS

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

(2010) T. Katayama et al.   NUCLEIC ACIDS RESEARCH

Ulla: a program for calculating environment-specific amino acid substitution tables

(2009) Semin Lee et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

An introduction to scripting in Ruby for biologists

(2009) Jan Aerts et al.   BMC BIOINFORMATICS

phyloXML: XML for evolutionary biology and comparative genomics

(2009) Mira V Han et al.   BMC BIOINFORMATICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

mspire: mass spectrometry proteomics in Ruby

(2008) J. T. Prince et al.   BIOINFORMATICS

BioJava: an open-source framework for bioinformatics

(2008) R. C. G. Holland et al.   BIOINFORMATICS