On the origin and evolutionary consequences of gene body DNA methylation
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
On the origin and evolutionary consequences of gene body DNA methylation
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 113, Issue 32, Pages 9111-9116
Publisher
Proceedings of the National Academy of Sciences
Online
2016-07-26
DOI
10.1073/pnas.1604666113
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Human body epigenome maps reveal noncanonical DNA methylation variation
- (2015) Matthew D. Schultz et al. NATURE
- Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
- (2015) Tuncay Baubec et al. NATURE
- DNA methylation pathways and their crosstalk with histone methylation
- (2015) Jiamu Du et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Comprehensive Annotation ofPhyscomitrella patensSmall RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
- (2015) Ceyda Coruh et al. PLANT CELL
- DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
- (2015) Manu J Dubin et al. eLife
- Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence
- (2014) T. Arias et al. AMERICAN JOURNAL OF BOTANY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes
- (2014) Yifeng Xu et al. NUCLEIC ACIDS RESEARCH
- Mapping the Epigenetic Basis of Complex Traits
- (2014) S. Cortijo et al. SCIENCE
- Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
- (2013) Hume Stroud et al. CELL
- The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
- (2013) M. Regulski et al. GENOME RESEARCH
- Patterns of population epigenomic diversity
- (2013) Robert J. Schmitz et al. NATURE
- Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants
- (2012) Jiamu Du et al. CELL
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation
- (2012) M. Colome-Tatche et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes
- (2012) Matthew D. Schultz et al. TRENDS IN GENETICS
- Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks
- (2012) Hisato Kobayashi et al. PLoS Genetics
- Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes
- (2012) Devin Coleman-Derr et al. PLoS Genetics
- Suppression of cryptic intragenic transcripts is required for embryonic stem cell self-renewal
- (2011) Chia-Hui Lin et al. EMBO JOURNAL
- Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
- (2011) S. Takuno et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
- (2009) Asuka Miura et al. EMBO JOURNAL
- Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
- (2009) J. Reinders et al. GENES & DEVELOPMENT
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
- (2008) Daniel Zilberman et al. NATURE
- How to usefully compare homologous plant genes and chromosomes as DNA sequences
- (2008) Eric Lyons et al. PLANT JOURNAL
- Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana
- (2008) H. Saze et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now