The fate of duplicated genes in a polyploid plant genome

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

Genomic expression dominance in allopolyploids

(2012) Ryan A Rapp et al.   BMC BIOLOGY

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus

(2012) Janet Higgins et al.   BMC GENOMICS

Extensive and Continuous Duplication Facilitates Rapid Evolution and Diversification of Gene Families

(2012) Dan Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular evolution of vertebrate sex-determining genes

(2011) Shuuji Mawaribuchi et al.   CHROMOSOME RESEARCH

ACCESSORY COSTS OF SEED PRODUCTION AND THE EVOLUTION OF ANGIOSPERMS

(2011) Janice M. Lord et al.   EVOLUTION

Extensive and Heritable Epigenetic Remodeling and Genetic Stability Accompany Allohexaploidization of Wheat

(2011) Na Zhao et al.   GENETICS

Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs

(2011) Michal Kenan-Eichler et al.   GENETICS

Organ and Cell Type–Specific Complementary Expression Patterns and Regulatory Neofunctionalization between Duplicated Genes in Arabidopsis thaliana

(2011) Shao-Lun Liu et al.   Genome Biology and Evolution

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

(2011) E. Rodgers-Melnick et al.   GENOME RESEARCH

Rapid Functional Divergence of a Newly Evolved Polyubiquitin Gene in Drosophila and Its Role in the Trade-off between Male Fecundity and Lifespan

(2011) Z. Zhan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

SPATULA and ALCATRAZ, are partially redundant, functionally diverging bHLH genes required for Arabidopsis gynoecium and fruit development

(2011) Michael Groszmann et al.   PLANT JOURNAL

Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

(2011) Z. Xiong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia

(2010) Olivier Arnaiz et al.   BMC GENOMICS

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Generality and characteristics of genetic and epigenetic changes in newly synthesized allotetraploid wheat lines

(2010) Bao Qi et al.   Journal of Genetics and Genomics

Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae)

(2010) MATTHEW J. HEGARTY et al.   MOLECULAR ECOLOGY

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus

(2010) Richard J. A. Buggs et al.   NEW PHYTOLOGIST

Impact of natural genetic variation on the transcriptome of autotetraploidArabidopsis thaliana

(2010) Zheng Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions

(2010) Saša Stefanović et al.   SYSTEMATIC BOTANY

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae)

(2009) Jennifer A Tate et al.   BMC PLANT BIOLOGY

Polyploidy and genome restructuring: a variety of outcomes

(2009) Andrew L Hufton et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)

(2009) B. Chaudhary et al.   GENETICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Genome evolution in allopolyploid wheat—a revolutionary reprogramming followed by gradual changes

(2009) Moshe Feldman et al.   Journal of Genetics and Genomics

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Molecular and Chromosomal Evidence for Allopolyploidy in Soybean

(2009) N. Gill et al.   PLANT PHYSIOLOGY

Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

(2009) H. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

(2009) J. A. Fawcett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The flowering world: a tale of duplications

(2009) Yves Van de Peer et al.   TRENDS IN PLANT SCIENCE

Darwin's second “abominable mystery”: Why are there so many angiosperm species?

(2008) William L. Crepet et al.   AMERICAN JOURNAL OF BOTANY

Evolutionary Genetics of Genome Merger and Doubling in Plants

(2008) Jeff J. Doyle et al.   Annual Review of Genetics

Testing the Ratio of Two Poisson Rates

(2008) Kangxia Gu et al.   BIOMETRICAL JOURNAL

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

(2008) Lex Flagel et al.   BMC BIOLOGY

Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean

(2008) R. W. Innes et al.   PLANT PHYSIOLOGY

Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids

(2008) E. Lyons et al.   PLANT PHYSIOLOGY

Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis

(2008) M. Semon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA