Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
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Title
Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
Authors
Keywords
Wheat, Wheat transcriptome, mRNA-Seq, Diploidization, Homoeologues, Polyploidy
Journal
BMC GENOMICS
Volume 15, Issue 1, Pages 276
Publisher
Springer Nature
Online
2014-04-11
DOI
10.1186/1471-2164-15-276
References
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Note: Only part of the references are listed.- Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
- (2013) Tatiana Belova et al. BMC GENOMICS
- HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids
- (2013) Aziz Mithani et al. BMC GENOMICS
- Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat
- (2013) Huakun Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic expression dominance in allopolyploids
- (2012) Ryan A Rapp et al. BMC BIOLOGY
- Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines
- (2012) Bao Qi et al. BMC BIOLOGY
- Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat
- (2012) Andreas W Schreiber et al. BMC GENOMICS
- Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
- (2012) Janet Higgins et al. BMC GENOMICS
- Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat
- (2012) Sunish K Sehgal et al. BMC PLANT BIOLOGY
- Integrating cereal genomics to support innovation in the Triticeae
- (2012) C. Feuillet et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Analysis of the bread wheat genome using whole-genome shotgun sequencing
- (2012) Rachel Brenchley et al. NATURE
- Pericentromeric Effects Shape the Patterns of Divergence, Retention, and Expression of Duplicated Genes in the Paleopolyploid Soybean
- (2012) J. Du et al. PLANT CELL
- Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa
- (2012) Feng Cheng et al. PLoS One
- Polyploidy in fungi: evolution after whole-genome duplication
- (2012) W. Albertin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Extensive and Heritable Epigenetic Remodeling and Genetic Stability Accompany Allohexaploidization of Wheat
- (2011) Na Zhao et al. GENETICS
- Organ and Cell Type–Specific Complementary Expression Patterns and Regulatory Neofunctionalization between Duplicated Genes in Arabidopsis thaliana
- (2011) Shao-Lun Liu et al. Genome Biology and Evolution
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Changes in Twelve Homoeologous Genomic Regions in Soybean following Three Rounds of Polyploidy
- (2011) Andrew J. Severin et al. PLANT CELL
- Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives
- (2011) Thomas Wicker et al. PLANT CELL
- Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
- (2011) J. C. Schnable et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- The collapse of gene complement following whole genome duplication
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- Homoeolog-specific transcriptional bias in allopolyploid wheat
- (2010) Alina R Akhunova et al. BMC GENOMICS
- Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina × townsendii and Spartina anglica (Poaceae)
- (2010) Houda Chelaifa et al. NEW PHYTOLOGIST
- Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids
- (2010) Véronique Chagué et al. NEW PHYTOLOGIST
- Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
- (2010) Ignacio Medina et al. NUCLEIC ACIDS RESEARCH
- Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces
- (2010) Frédéric Choulet et al. PLANT CELL
- Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs
- (2010) Margaret R. Woodhouse et al. PLOS BIOLOGY
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
- (2009) Jacob F. Degner et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat
- (2009) Cristobal Uauy et al. BMC PLANT BIOLOGY
- Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)
- (2009) B. Chaudhary et al. GENETICS
- A quantitative genomic imbalance gene expression assay in a hexaploid species: wheat (Triticum aestivum)
- (2009) K. Stamati et al. GENOME
- Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation
- (2009) Lex E. Flagel et al. NEW PHYTOLOGIST
- Differential expression of duplicated peroxidase genes in the allotetraploid Brassica napus
- (2009) Jianwei Zhao et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Duplicate genes increase expression diversity in closely related species and allopolyploids
- (2009) M. Ha et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Expression profiling of the bottom fermenting yeastSaccharomyces pastorianusorthologous genes using oligonucleotide microarrays
- (2009) Toshiko Minato et al. YEAST
- Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
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- Nonadditive Expression of Homoeologous Genes Is Established Upon Polyploidization in Hexaploid Wheat
- (2008) M. Pumphrey et al. GENETICS
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
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- Variation for homoeologous gene silencing in hexaploid wheat
- (2008) Andrew Bottley et al. PLANT JOURNAL
- Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant
- (2008) R. Hovav et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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