标题
The transcriptional landscape of polyploid wheat
作者
关键词
-
出版物
SCIENCE
Volume 361, Issue 6403, Pages eaar6089
出版商
American Association for the Advancement of Science (AAAS)
发表日期
2018-08-21
DOI
10.1126/science.aar6089
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome
- (2018) Hainan Zhao et al. PLANT PHYSIOLOGY
- Shifting the limits in wheat research and breeding using a fully annotated reference genome
- (2018) et al. SCIENCE
- uORF-mediated translation allows engineered plant disease resistance without fitness costs
- (2017) Guoyong Xu et al. NATURE
- The evolutionary significance of polyploidy
- (2017) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower
- (2017) Patrick P. Edger et al. PLANT CELL
- Uncovering hidden variation in polyploid wheat
- (2017) Ksenia V. Krasileva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CerealsDB 3.0: expansion of resources and data integration
- (2016) Paul A. Wilkinson et al. BMC BIOINFORMATICS
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
- (2016) Philippa Borrill et al. PLANT PHYSIOLOGY
- On the origin and evolutionary consequences of gene body DNA methylation
- (2016) Adam J. Bewick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Integration of omic networks in a developmental atlas of maize
- (2016) J. W. Walley et al. SCIENCE
- Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA
- (2016) Yi Zhang et al. Nature Communications
- Arabidopsis EF-Tu receptor enhances bacterial disease resistance in transgenic wheat
- (2015) Henk-jan Schoonbeek et al. NEW PHYTOLOGIST
- Genomics as the key to unlocking the polyploid potential of wheat
- (2015) Philippa Borrill et al. NEW PHYTOLOGIST
- PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants
- (2015) Chi-Nga Chow et al. NUCLEIC ACIDS RESEARCH
- The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity
- (2015) Lingfei Hu et al. PLANT PHYSIOLOGY
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- The fate of recent duplicated genes following a fourth-round whole genome duplication in a tetraploid fish, common carp (Cyprinus carpio)
- (2015) Jiong-Tang Li et al. Scientific Reports
- FactoMineR: AnRPackage for Multivariate Analysis
- (2015) Sébastien Lê et al. Journal of Statistical Software
- MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice
- (2015) Chunyan Yu et al. PLoS One
- Comparative Transcriptome Analysis of Shoots and Roots of TNG67 and TCN1 Rice Seedlings under Cold Stress and Following Subsequent Recovery: Insights into Metabolic Pathways, Phytohormones, and Transcription Factors
- (2015) Yun-Wei Yang et al. PLoS One
- Doubling down on genomes: Polyploidy and crop plants
- (2014) Simon Renny-Byfield et al. AMERICAN JOURNAL OF BOTANY
- genomation: a toolkit to summarize, annotate and visualize genomic intervals
- (2014) A. Akalin et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
- (2014) Lindsey J Leach et al. BMC GENOMICS
- Ancient Gene Duplicates in Gossypium (Cotton) Exhibit Near-Complete Expression Divergence
- (2014) Simon Renny-Byfield et al. Genome Biology and Evolution
- MADS-Box Transcription Factor AGL21 Regulates Lateral Root Development and Responds to Multiple External and Physiological Signals
- (2014) Lin-Hui Yu et al. Molecular Plant
- Genome interplay in the grain transcriptome of hexaploid bread wheat
- (2014) M. Pfeifer et al. SCIENCE
- Functional characterization of GPC-1 genes in hexaploid wheat
- (2013) Raz Avni et al. PLANTA
- The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
- (2013) Siyi Guo et al. Nature Communications
- The HSF-like Transcription Factor TBF1 Is a Major Molecular Switch for Plant Growth-to-Defense Transition
- (2012) Karolina M. Pajerowska-Mukhtar et al. CURRENT BIOLOGY
- Homoeolog expression bias and expression level dominance in allopolyploid cotton
- (2012) M-J Yoo et al. HEREDITY
- Genomic asymmetry in allopolyploid plants: wheat as a model
- (2012) M. Feldman et al. JOURNAL OF EXPERIMENTAL BOTANY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Homoeolog expression bias and expression level dominance in allopolyploids
- (2012) C. E. Grover et al. NEW PHYTOLOGIST
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- The fate of duplicated genes in a polyploid plant genome
- (2012) Anne Roulin et al. PLANT JOURNAL
- Heat Shock Factor HsfB1 Primes Gene Transcription and Systemic Acquired Resistance in Arabidopsis
- (2012) T. Pick et al. PLANT PHYSIOLOGY
- Gene duplication as a mechanism of genomic adaptation to a changing environment
- (2012) F. A. Kondrashov PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Polyploidy in fungi: evolution after whole-genome duplication
- (2012) W. Albertin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
- (2011) Sebastian Proost et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis HsfB1 and HsfB2b Act as Repressors of the Expression of Heat-Inducible Hsfs But Positively Regulate the Acquired Thermotolerance
- (2011) M. Ikeda et al. PLANT PHYSIOLOGY
- BioRuby: bioinformatics software for the Ruby programming language
- (2010) N. Goto et al. BIOINFORMATICS
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity
- (2010) Daniel Lang et al. Genome Biology and Evolution
- Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes
- (2010) Satoko Matsukura et al. MOLECULAR GENETICS AND GENOMICS
- Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids
- (2010) Véronique Chagué et al. NEW PHYTOLOGIST
- Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus
- (2010) Richard J. A. Buggs et al. NEW PHYTOLOGIST
- Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
- (2010) Vân Anh Huynh-Thu et al. PLoS One
- Heat Shock Factors HsfB1 and HsfB2b Are Involved in the Regulation of Pdf1.2 Expression and Pathogen Resistance in Arabidopsis
- (2009) Mukesh Kumar et al. Molecular Plant
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses
- (2008) Yuanqing Jiang et al. PLANT MOLECULAR BIOLOGY
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