Gene duplication as a mechanism of genomic adaptation to a changing environment

Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group

(2012) Nicolás Lavagnino et al.   Evolutionary Bioinformatics

Antifreeze protein gene amplification facilitated niche exploitation and speciation in wolffish

(2012) Mariève Desjardins et al.   FEBS Journal

Venom evolution through gene duplications

(2012) Emily S.W. Wong et al.   GENE

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Microevolution of Cryptococcus neoformans Driven by Massive Tandem Gene Amplification

(2012) E. W. L. Chow et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive and Continuous Duplication Facilitates Rapid Evolution and Diversification of Gene Families

(2012) Dan Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Independent Recruitment of a Flavin-Dependent Monooxygenase for Safe Accumulation of Sequestered Pyrrolizidine Alkaloids in Grasshoppers and Moths

(2012) Linzhu Wang et al.   PLoS One

Increasedpfmdr1Copy Number and Sequence Polymorphisms in Plasmodium falciparum Isolates from Sudanese Malaria Patients Treated with Artemether-Lumefantrine

(2011) Nahla B. Gadalla et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics

(2011) Anthony Levasseur et al.   Biology Direct

Copy-Number Variation: The Balance between Gene Dosage and Expression in Drosophila melanogaster

(2011) Jun Zhou et al.   Genome Biology and Evolution

Dynamics of Gene Duplication in the Genomes of Chlorophyll d-Producing Cyanobacteria: Implications for the Ecological Niche

(2011) Scott R. Miller et al.   Genome Biology and Evolution

Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

(2011) E. Gazave et al.   GENOME RESEARCH

Mechanism of Resistance of Evolved Glyphosate-Resistant Palmer Amaranth (Amaranthus palmeri)

(2011) Todd A. Gaines et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Adaptation of Saccharomyces cerevisiae to saline stress through laboratory evolution

(2011) R. DHAR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Extreme diversity of scorpion venom peptides and proteins revealed by transcriptomic analysis: Implication for proteome evolution of scorpion venom arsenal

(2011) Yibao Ma et al.   Journal of Proteomics

Dynamic Gene Copy Number Variation in Collinear Regions of Grass Genomes

(2011) J.-H. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Adaptation to drought in two wild tomato species: the evolution of the Asr gene family

(2011) Iris Fischer et al.   NEW PHYTOLOGIST

Gene amplification and insecticide resistance

(2011) Chris Bass et al.   PEST MANAGEMENT SCIENCE

What have the mechanisms of resistance to glyphosate taught us?

(2011) Dale L Shaner et al.   PEST MANAGEMENT SCIENCE

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Global Chromosomal Structural Instability in a Subpopulation of Starving Escherichia coli Cells

(2011) Dongxu Lin et al.   PLoS Genetics

In Vitro Sensitivity of Plasmodium falciparum Clinical Isolates from the China-Myanmar Border Area to Quinine and Association with Polymorphism in the Na+/H+ Exchanger

(2010) H. Meng et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Role of pfmdr1 Amplification and Expression in Induction of Resistance to Artemisinin Derivatives in Plasmodium falciparum

(2010) M. Chavchich et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

pfmdr1 Amplification and Fixation of pfcrt Chloroquine Resistance Alleles in Plasmodium falciparum in Venezuela

(2010) S. Griffing et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Evolutionary history and stress regulation of the lectin superfamily in higher plants

(2010) Shu-Ye Jiang et al.   BMC EVOLUTIONARY BIOLOGY

Gallin; an antimicrobial peptide member of a new avian defensin family, the ovodefensins, has been subject to recent gene duplication

(2010) Daoqing Gong et al.   BMC IMMUNOLOGY

Biosequestration via cooperative binding of copper byRalstonia pickettii

(2010) Fan Yang et al.   ENVIRONMENTAL TECHNOLOGY

Amplification of the Gene for Isoleucyl-tRNA Synthetase Facilitates Adaptation to the Fitness Cost of Mupirocin Resistance in Salmonella enterica

(2010) W. Paulander et al.   GENETICS

Duplication Frequency in a Population of Salmonella enterica Rapidly Approaches Steady State With or Without Recombination

(2010) A. B. Reams et al.   GENETICS

Gene Duplication and Environmental Adaptation within Yeast Populations

(2010) Ryan M. Ames et al.   Genome Biology and Evolution

Copy Number Variation Shapes Genome Diversity in Arabidopsis Over Immediate Family Generational Scales

(2010) Seth DeBolt   Genome Biology and Evolution

High incidence of ace-1 duplicated haplotypes in resistant Culex pipiens mosquitoes from Algeria

(2010) Haoues Alout et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes

(2010) S. Shigenobu et al.   INSECT MOLECULAR BIOLOGY

Expansion of Hexose Transporter Genes Was Associated with the Evolution of Aerobic Fermentation in Yeasts

(2010) Z. Lin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extraordinary Conservation, Gene Loss, and Positive Selection in the Evolution of an Ancient Neurotoxin

(2010) Shauna A. Murray et al.   MOLECULAR BIOLOGY AND EVOLUTION

Escape from growth restriction in small colony variants of Salmonella typhimurium by gene amplification and mutation

(2010) Maria Pränting et al.   MOLECULAR MICROBIOLOGY

Compensatory gene amplification restores fitness after inter-species gene replacements

(2010) Peter A. Lind et al.   MOLECULAR MICROBIOLOGY

Dosage Sensitivity Shapes the Evolution of Copy-Number Varied Regions

(2010) Benjamin Schuster-Böckler et al.   PLoS One

Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli

(2010) V. W. C. Soo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lateral Transfer of Genes from Fungi Underlies Carotenoid Production in Aphids

(2010) N. A. Moran et al.   SCIENCE

Gene Amplification and Adaptive Evolution in Bacteria

(2009) Dan I. Andersson et al.   Annual Review of Genetics

Copy Number Variation in Human Health, Disease, and Evolution

(2009) Feng Zhang et al.   Annual Review of Genomics and Human Genetics

Plasmodium falciparum pfmdr1 Amplification, Mefloquine Resistance, and Parasite Fitness

(2009) P. Preechapornkul et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The life and death of gene families

(2009) Jeffery P. Demuth et al.   BIOESSAYS

Analysis of recent segmental duplications in the bovine genome

(2009) George E Liu et al.   BMC GENOMICS

Human genes involved in copy number variation: mechanisms of origin, functional effects and implications for disease

(2009) A.J. de Smith et al.   CYTOGENETIC AND GENOME RESEARCH

Duplication, Selection and Gene Conversion in a Drosophila mojavensis Female Reproductive Protein Family

(2009) E. S. Kelleher et al.   GENETICS

Copy number variants, diseases and gene expression

(2009) C. N. Henrichsen et al.   HUMAN MOLECULAR GENETICS

Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates

(2009) M. W. Hahn   JOURNAL OF HEREDITY

The varieties of gene amplification, diversification and hypervariability in the human malaria parasite, Plasmodium falciparum

(2009) Thomas J. Templeton   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Bacterial gene amplification: implications for the evolution of antibiotic resistance

(2009) Linus Sandegren et al.   NATURE REVIEWS MICROBIOLOGY

Selective histories of poplar protease inhibitors: elevated polymorphism, purifying selection, and positive selection driving divergence of recent duplicates

(2009) Maurine Neiman et al.   NEW PHYTOLOGIST

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes

(2009) M. D. Lehti-Shiu et al.   PLANT PHYSIOLOGY

Gene amplification confers glyphosate resistance in Amaranthus palmeri

(2009) T. A. Gaines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin

(2009) J. F. Storz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Potential of fish opsin gene duplications to evolve new adaptive functions

(2009) Jun Gojobori et al.   TRENDS IN GENETICS

Gene Amplification of the Multidrug Resistance 1 Gene of Plasmodium vivax Isolates from Thailand, Laos, and Myanmar

(2008) M. Imwong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Cupriavidus metallidurans: evolution of a metal-resistant bacterium

(2008) Torsten von Rozycki et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria

(2008) Chih-Horng Kuo et al.   BMC EVOLUTIONARY BIOLOGY

Diversification and adaptive sequence evolution of Caenorhabditis lysozymes (Nematoda: Rhabditidae)

(2008) Hinrich Schulenburg et al.   BMC EVOLUTIONARY BIOLOGY

Tracking the evolution of a cold stress associated gene family in cold tolerant grasses

(2008) Simen R Sandve et al.   BMC EVOLUTIONARY BIOLOGY

Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

(2008) Amy J Powell et al.   BMC GENOMICS

Tetraploid citrus rootstocks are more tolerant to salt stress than diploid

(2008) Basel Saleh et al.   COMPTES RENDUS BIOLOGIES

Lager yeasts possess dynamic genomes that undergo rearrangements and gene amplification in response to stress

(2008) Tharappel C. James et al.   CURRENT GENETICS

Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae)

(2008) Dangwei Zhou et al.   GENE

Direct Evidence That Genetic Variation in Glycerol-3-Phosphate and Malate Dehydrogenase Genes (Gpdh and Mdh1) Affects Adult Ethanol Tolerance in Drosophila melanogaster

(2008) W. F. Eanes et al.   GENETICS

Extensive gene amplification and concerted evolution within the CPR family of cuticular proteins in mosquitoes

(2008) R. Scott Cornman et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Rapid Rates of Lineage-Specific Gene Duplication and Deletion in the α-Globin Gene Family

(2008) Federico G. Hoffmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of the adenylate-forming protein family in beetles: Multiple luciferase gene paralogues in fireflies and glow-worms

(2008) John C. Day et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The functional repertoires of metazoan genomes

(2008) Chris P. Ponting   NATURE REVIEWS GENETICS

The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity

(2008) Masatoshi Nei et al.   NATURE REVIEWS GENETICS

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli

(2008) K. Hanada et al.   PLANT PHYSIOLOGY

Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish

(2008) Z. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering Escherichia coli heat-resistance by synthetic gene amplification

(2008) D. Christ et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster

(2008) J. J. Emerson et al.   SCIENCE

Adaptive Copy Number Evolution in Malaria Parasites

(2008) Shalini Nair et al.   PLoS Genetics

The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

(2008) David Gresham et al.   PLoS Genetics

Modulation of gene expression in drug resistant Leishmania is associated with gene amplification, gene deletion and chromosome aneuploidy

(2008) Jean-Michel Ubeda et al.   GENOME BIOLOGY