Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

Ancient DNA complements microfossil record in deep-sea subsurface sediments

(2013) F. Lejzerowicz et al.   Biology Letters

Environmental bio-monitoring with high-throughput sequencing

(2013) J. Wang et al.   BRIEFINGS IN BIOINFORMATICS

A review of strategies to monitor water and sediment quality for a sustainability assessment of marine environment

(2013) Seyedeh Belin Tavakoly Sany et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

PSAMMOPHAGA SAPELA N. SP., A NEW MONOTHALAMOUS FORAMINIFERAN FROM COASTAL GEORGIA, U.S.A.: FINE STRUCTURE, GAMETOGENESIS, AND PHYLOGENETIC PLACEMENT

(2013) D. Z. Altin-Ballero et al.   JOURNAL OF FORAMINIFERAL RESEARCH

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

Evaluating Ethanol-based Sample Preservation to Facilitate Use of DNA Barcoding in Routine Freshwater Biomonitoring Programs Using Benthic Macroinvertebrates

(2013) Eric D. Stein et al.   PLoS One

Can Abundance of Protists Be Inferred from Sequence Data: A Case Study of Foraminifera

(2013) Alexandra A-T. Weber et al.   PLoS One

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

(2012) Joachim Schönfeld et al.   MARINE MICROPALEONTOLOGY

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Dramatic Shifts in Benthic Microbial Eukaryote Communities following the Deepwater Horizon Oil Spill

(2012) Holly M. Bik et al.   PLoS One

Changes in Sedimentary Redox Associated with Mussel (Mytilus edulis L.) Farms on the West-Coast of Scotland

(2012) Thomas A. Wilding   PLoS One

Salmon farm impacts on muddy-sediment megabenthic assemblages on the west coast of Scotland

(2012) TA Wilding et al.   Aquaculture Environment Interactions

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

Accessing marine protists from the anoxic Cariaco Basin

(2011) V Edgcomb et al.   ISME Journal

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

(2011) Béatrice Lecroq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemical use in salmon aquaculture: A review of current practices and possible environmental effects

(2010) Les Burridge et al.   AQUACULTURE

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

(2010) Anthony A Chariton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Short rDNA Barcodes for Species Identification in Foraminifera

(2010) JAN PAWLOWSKI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

MAGNETITE-BEARING FORAMINIFERA FROM ADMIRALTY BAY, WEST ANTARCTICA, WITH DESCRIPTION OF PSAMMOPHAGA MAGNETICA, SP. NOV.

(2010) J. Pawlowski et al.   JOURNAL OF FORAMINIFERAL RESEARCH

Comparison of benthic foraminifera and macrofaunal indicators of the impact of oil-based drill mud disposal

(2010) Mariéva Denoyelle et al.   MARINE POLLUTION BULLETIN

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments

(2010) C. CORINALDESI et al.   MOLECULAR ECOLOGY

New genera and species of monothalamous Foraminifera from Balaclava and Kazach’ya Bays (Crimean Peninsula, Black Sea)

(2010) Andrew J. Gooday et al.   Marine Biodiversity

Assessing the suitability of a range of benthic indices in the evaluation of environmental impact of fin and shellfish aquaculture located in sites across Europe

(2009) Ángel Borja et al.   AQUACULTURE

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities

(2009) Thorsten Stoeck et al.   BMC BIOLOGY

Impact of oil-based drill mud disposal on benthic foraminiferal assemblages on the continental margin off Angola

(2009) F.J. Jorissen et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Taxonomic sufficiency: The influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates

(2009) F. Chris Jones   ENVIRONMENTAL REVIEWS

Benthic foraminifera as bio-indicators of trace element pollution in the heavily contaminated Santa Gilla lagoon (Cagliari, Italy)

(2009) Fabrizio Frontalini et al.   MARINE POLLUTION BULLETIN

Impact of fish farming on foraminiferal community, Drvenik Veliki Island, Adriatic Sea, Croatia

(2009) Jelena Vidović et al.   MARINE POLLUTION BULLETIN

Genetic differentiation between Arctic and Antarctic monothalamous foraminiferans

(2008) Jan Pawlowski et al.   POLAR BIOLOGY

Comparison of benthic foraminiferal and macrofaunal responses to organic pollution in the Firth of Clyde (Scotland)

(2007) M. Mojtahid et al.   MARINE POLLUTION BULLETIN