Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification
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Title
Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification
Authors
Keywords
Next-generation-sequencing, Species richness, Abundance, Biomonitoring, Insect biodiversity, Mitochondria, PCR-independent, Metabarcoding
Journal
GigaScience
Volume 2, Issue 1, Pages -
Publisher
Oxford University Press (OUP)
Online
2013-03-27
DOI
10.1186/2047-217x-2-4
References
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Note: Only part of the references are listed.- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
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- Environmental DNA
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
- (2012) Douglas W. Yu et al. Methods in Ecology and Evolution
- Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
- (2012) Mehrdad Hajibabaei et al. BMC ECOLOGY
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Principles for the monitoring and evaluation of wetland extent, condition and function in Australia
- (2011) Neil Saintilan et al. ENVIRONMENTAL MONITORING AND ASSESSMENT
- Influence of management practices on large herbivore diet—Case of European bison in Białowieża Primeval Forest (Poland)
- (2011) Rafał Kowalczyk et al. FOREST ECOLOGY AND MANAGEMENT
- Limited efficiency of universal mini-barcode primers for DNA amplification from desert reptiles, birds and mammals
- (2011) I.A. Arif et al. GENETICS AND MOLECULAR RESEARCH
- Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
- (2011) V. C. Mason et al. GENOME RESEARCH
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms
- (2011) DAVID S. BROWN et al. Molecular Ecology Resources
- Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments
- (2011) Béatrice Lecroq et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
- (2011) Thomas J. Sharpton et al. PLoS Computational Biology
- ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
- (2010) Eva Bellemain et al. BMC MICROBIOLOGY
- The development of butterfly indicators in the United Kingdom and assessments in 2010
- (2010) T. Brereton et al. JOURNAL OF INSECT CONSERVATION
- Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host
- (2010) RODOLPHE ROUGERIE et al. MOLECULAR ECOLOGY
- 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
- (2010) Leho Tedersoo et al. NEW PHYTOLOGIST
- Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
- (2010) Marcus J. Claesson et al. NUCLEIC ACIDS RESEARCH
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assessing Macroinvertebrate Biodiversity in Freshwater Ecosystems: Advances and Challenges in DNA-based Approaches
- (2010) Michael E. Pfrender et al. QUARTERLY REVIEW OF BIOLOGY
- Second-generation environmental sequencing unmasks marine metazoan biodiversity
- (2010) Vera G. Fonseca et al. Nature Communications
- Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures
- (2009) Eeva M Soininen et al. Frontiers in Zoology
- Windshield splatter analysis with the Galaxy metagenomic pipeline
- (2009) S. Kosakovsky Pond et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Systematic artifacts in metagenomes from complex microbial communities
- (2009) Vicente Gomez-Alvarez et al. ISME Journal
- Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
- (2009) BRUCE E. DEAGLE et al. MOLECULAR ECOLOGY
- Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure
- (2009) DOROTA L. PORAZINSKA et al. Molecular Ecology Resources
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- (2009) YANWEI LI et al. Molecular Ecology Resources
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- (2009) Q. Xia et al. SCIENCE
- Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes
- (2008) J. A. Frank et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A universal DNA mini-barcode for biodiversity analysis
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